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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5542046
Gene symbol: Col23a1
Gene name: collagen, type XXIII, alpha 1
Probe: RIKEN clone 6820412L02 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9688: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present Regionally restricted GUDMAP:9688
TS17: genitourinary system mesenchyme Present GUDMAP:9688
TS17: mesonephros Present Regionally restricted GUDMAP:9688
TS17: mesonephros mesenchyme Present Regionally restricted GUDMAP:9688 caudal expression; regional expression only detected in caudal mesonephros adjacent to metanephric mesenchyme
TS17: metanephric mesenchyme Present GUDMAP:9688
TS17: mesonephric tubule Absent GUDMAP:9688
TS17: nephric duct, mesonephric portion Absent GUDMAP:9688
TS17: nephric duct, metanephric portion Absent GUDMAP:9688

Specimen GUDMAP:9689: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:9689
TS21: mesonephros of male Present Regionally restricted GUDMAP:9689
TS21: mesonephric mesenchyme of male Present GUDMAP:9689 strong regional expression along the medial side of the nephric duct
TS21: nephric duct of male, rest of Present GUDMAP:9689 moderate expression in mesenchyme
TS21: mesenchyme of nephric duct of male Present GUDMAP:9689 possible weak expression
TS21: mesonephric tubule of male Absent GUDMAP:9689
TS21: paramesonephric duct of male, mesonephric portion Absent GUDMAP:9689
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:9689 expression likely restricted to the mesenchyme surrounding the duct epithelium
TS21: paramesonephric duct of male, rest of Ambiguous GUDMAP:9689 weak expression possible in mesenchyme
TS21: mesenchyme of rest of paramesonephric duct of male Ambiguous GUDMAP:9689 possible weak expression
TS21: testis Ambiguous GUDMAP:9689 very weak expression possible in primary sex cords and interstitium
TS21: primary sex cord Ambiguous GUDMAP:9689 very weak possible expression
TS21: interstitium of the testis Ambiguous GUDMAP:9689 very weak possible expression
TS21: developing vasculature of male mesonephros Absent GUDMAP:9689

Specimen GUDMAP:9690: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: cap mesenchyme Absent GUDMAP:9690
TS21: ureteric tip Absent GUDMAP:9690
TS21: urinary system Ambiguous GUDMAP:9690
TS21: metanephros Ambiguous GUDMAP:9690 weak expression possible in renal interstitium
TS21: renal interstitium Ambiguous GUDMAP:9690 possible weak expression

Specimen GUDMAP:9691: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present Regionally restricted GUDMAP:9691
TS21: mesonephros of female Present Regionally restricted GUDMAP:9691
TS21: mesonephric mesenchyme of female Present GUDMAP:9691
TS21: mesenchyme of nephric duct of female Present GUDMAP:9691
TS21: mesonephric tubule of female Absent GUDMAP:9691
TS21: coelomic epithelium of female mesonephros Absent GUDMAP:9691
TS21: ovary Absent GUDMAP:9691
TS21: nephric duct of female, mesonephric portion Ambiguous GUDMAP:9691 expression likely restricted to the mesenchyme surrounding the duct epithelium
TS21: paramesonephric duct of female, mesonephric portion Ambiguous GUDMAP:9691 expression possible
TS21: nephric duct of female, rest of Ambiguous GUDMAP:9691 moderate expression in mesenchyme
TS21: paramesonephric duct of female, rest of Ambiguous GUDMAP:9691 weak expression possible in mesenchyme
TS21: developing vasculature of female mesonephros Absent GUDMAP:9691

Specimen GUDMAP:9692: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urinary system Present Regionally restricted GUDMAP:9692
TS21: ureter Present Regionally restricted GUDMAP:9692
TS21: primitive bladder Absent GUDMAP:9692

Specimen GUDMAP:10754: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs, but no expression was detected. Thus, it is possible that very weak levels of gene expression were not detectable in this experiment.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:10754
TS23: metanephros Present Regionally restricted GUDMAP:10754
TS23: renal cortex Present Regionally restricted GUDMAP:10754
TS23: renal cortical interstitium Present Regionally restricted GUDMAP:10754
TS23: renal medulla Present Regionally restricted GUDMAP:10754
TS23: renal medullary interstitium Present GUDMAP:10754
TS23: renal pelvis Present Regionally restricted GUDMAP:10754
TS23: pelvic smooth muscle Present GUDMAP:10754
TS23: ureter Present Regionally restricted GUDMAP:10754
TS23: ureteral mesenchyme Present GUDMAP:10754
TS23: ureteral smooth muscle layer Present GUDMAP:10754
TS23: ureteric tip Absent GUDMAP:10754
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:10754
TS23: maturing renal corpuscle Absent GUDMAP:10754
TS23: cortical renal tubule Absent GUDMAP:10754
TS23: cortical collecting duct Absent GUDMAP:10754
TS23: renal cortical vasculature Absent GUDMAP:10754
TS23: immature loop of Henle Absent GUDMAP:10754
TS23: renal medullary vasculature Absent GUDMAP:10754
TS23: medullary collecting duct Absent GUDMAP:10754
TS23: pelvic urothelial lining Absent GUDMAP:10754
TS23: perihilar interstitium Absent GUDMAP:10754
TS23: urothelium of ureter Absent GUDMAP:10754
TS23: ureteral mesenchyme outer layer Absent GUDMAP:10754
TS23: ureteral vasculature Absent GUDMAP:10754
TS23: nephrogenic zone Ambiguous GUDMAP:10754 signal seen is likely to be background staining
TS23: nephrogenic interstitium Ambiguous GUDMAP:10754
TS23: cap mesenchyme Ambiguous GUDMAP:10754
TS23: pretubular aggregate Ambiguous GUDMAP:10754

Specimen GUDMAP:10755: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs, but no expression was detected. Thus, it is possible that very weak levels of gene expression were not detectable in this experiment.
Structure Level Pattern Image Note
TS23: ureter Present Regionally restricted GUDMAP:10755
TS23: ureteral mesenchyme Present GUDMAP:10755
TS23: ureteral smooth muscle layer Present GUDMAP:10755
TS23: urothelium of ureter Absent GUDMAP:10755
TS23: ureteral mesenchyme outer layer Absent GUDMAP:10755
TS23: ureteral vasculature Absent GUDMAP:10755

Specimen GUDMAP:10756: postnatal adult (more )
Note: This animal was sexually mature. Visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs, but no expression was detected. Thus, it is possible that very weak levels of gene expression were not detected.
Structure Level Pattern Image Note
TS28: metanephros Absent GUDMAP:10756


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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory