Slc18a1 RNA in situ Gene Expression Assay

Gene Expression Data
Assay Details

Assay

Reference:	J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type:	RNA in situ
MGI Accession ID:	MGI:5541868
Gene symbol:	Slc18a1
Gene name:	solute carrier family 18 (vesicular monoamine), member 1

Probe:	RIKEN clone 4832416I10 subclone
Probe preparation:	Antisense labelled with digoxigenin RNA
Visualized with:	Alkaline phosphatase

Results

GUDMAP:9039 ©

Specimen GUDMAP:9039: embryonic day 15.5 (more

)
Note: Labeling was visualized using BM purple.

Structure	Level	Pattern	Image	Note
TS23: urinary system	Present	Regionally restricted	GUDMAP:9039
TS23: metanephros	Present	Regionally restricted	GUDMAP:9039
TS23: renal cortex	Present	Regionally restricted	GUDMAP:9039
TS23: cortical renal tubule	Present	Regionally restricted	GUDMAP:9039
TS23: cortical early proximal tubule	Present	Regionally restricted	GUDMAP:9039	expression in a possible subset of maturing proximal tubules; absent from tubules of capillary loop nephrons
TS23: maturing nephron	Present	Regionally restricted	GUDMAP:9039
TS23: late tubule	Present		GUDMAP:9039
TS23: renal capsule	Absent		GUDMAP:9039
TS23: nephrogenic zone	Absent		GUDMAP:9039
TS23: nephrogenic interstitium	Absent		GUDMAP:9039
TS23: cap mesenchyme	Absent		GUDMAP:9039
TS23: pretubular aggregate	Absent		GUDMAP:9039
TS23: ureteric tip	Absent		GUDMAP:9039
TS23: ureteric tree terminal branch excluding tip itself	Absent		GUDMAP:9039
TS23: renal vesicle	Absent		GUDMAP:9039
TS23: comma-shaped body	Absent		GUDMAP:9039
TS23: upper limb of comma-shaped body	Absent		GUDMAP:9039
TS23: lower limb of comma-shaped body	Absent		GUDMAP:9039
TS23: renal connecting tubule of s-shaped body	Absent		GUDMAP:9039
TS23: distal segment of s-shaped body	Absent		GUDMAP:9039
TS23: medial segment of s-shaped body	Absent		GUDMAP:9039
TS23: parietal epithelium of s-shaped body	Absent		GUDMAP:9039
TS23: parietal epithelium of capillary loop renal corpuscle	Absent		GUDMAP:9039
TS23: presumptive mesangium of capillary loop renal corpuscle	Absent		GUDMAP:9039
TS23: presumptive endothelium of capillary loop renal corpuscle	Absent		GUDMAP:9039
TS23: associated interstitium of capillary loop renal corpuscle	Absent		GUDMAP:9039
TS23: glomerular capillary system of maturing glomerular tuft	Absent		GUDMAP:9039
TS23: glomerular basement membrane of maturing renal corpuscle	Absent		GUDMAP:9039
TS23: glomerular mesangium of maturing glomerular tuft	Absent		GUDMAP:9039
TS23: Bowman's capsule of maturing renal corpuscle	Absent		GUDMAP:9039
TS23: parietal epithelium of maturing renal corpuscle	Absent		GUDMAP:9039
TS23: glomerular mesangium of maturing renal corpuscle	Absent		GUDMAP:9039
TS23: juxtaglomerular arteriole	Absent		GUDMAP:9039
TS23: cortical collecting duct	Absent		GUDMAP:9039
TS23: renal cortical interstitium	Absent		GUDMAP:9039
TS23: renal cortical vasculature	Absent		GUDMAP:9039
TS23: renal cortical arterial system	Absent		GUDMAP:9039
TS23: renal cortical venous system	Absent		GUDMAP:9039
TS23: renal cortical capillary	Absent		GUDMAP:9039
TS23: renal connecting tubule	Absent		GUDMAP:9039
TS23: bend of immature loop of Henle	Absent		GUDMAP:9039
TS23: renal medullary interstitium	Absent		GUDMAP:9039
TS23: renal medullary vasculature	Absent		GUDMAP:9039
TS23: renal medullary arterial system	Absent		GUDMAP:9039
TS23: renal medullary venous system	Absent		GUDMAP:9039
TS23: renal medullary capillary	Absent		GUDMAP:9039
TS23: medullary collecting duct	Absent		GUDMAP:9039
TS23: renal calyx	Absent		GUDMAP:9039
TS23: pelvic smooth muscle	Absent		GUDMAP:9039
TS23: perihilar interstitium	Absent		GUDMAP:9039
TS23: collecting duct	Absent		GUDMAP:9039
TS23: renal interstitium	Absent		GUDMAP:9039
TS23: renal vasculature	Absent		GUDMAP:9039
TS23: early nephron	Absent		GUDMAP:9039
TS23: s-shaped body	Absent		GUDMAP:9039
TS23: proximal segment of s-shaped body	Absent		GUDMAP:9039
TS23: visceral epithelium of s-shaped body	Absent		GUDMAP:9039
TS23: maturing renal corpuscle	Absent		GUDMAP:9039
TS23: maturing glomerular tuft	Absent		GUDMAP:9039
TS23: visceral epithelium of maturing renal corpuscle	Absent		GUDMAP:9039
TS23: capillary loop renal corpuscle	Absent		GUDMAP:9039
TS23: visceral epithelium of capillary loop renal corpuscle	Absent		GUDMAP:9039
TS23: renal pelvis	Absent		GUDMAP:9039
TS23: pelvic urothelial lining	Absent		GUDMAP:9039
TS23: developing capillary loop stage nephron group	Absent		GUDMAP:9039
TS23: anlage of loop of Henle of cortical renal tubule	Absent		GUDMAP:9039
TS23: renal medulla	Absent		GUDMAP:9039
TS23: immature loop of Henle	Absent		GUDMAP:9039
TS23: cortical early distal tubule	Ambiguous		GUDMAP:9039	expression uncertain due to inability to identify tubule subtype; expression absent from early distal tubules of capillary loop nephrons
TS23: cortical renal tubule of maturing nephron group	Present	Regionally restricted	GUDMAP:9039
TS23: early proximal tubule of maturing nephron	Present		GUDMAP:9039	expression in a possible subset of maturing proximal tubules
TS23: renal connecting tubule of capillary loop nephron	Absent		GUDMAP:9039
TS23: renal connecting tubule of maturing nephron	Absent		GUDMAP:9039
TS23: cortical renal tubule of capillary loop nephron group	Absent		GUDMAP:9039
TS23: early distal tubule of capillary loop nephron	Absent		GUDMAP:9039
TS23: early proximal tubule of capillary loop nephron	Absent		GUDMAP:9039
TS23: early distal tubule of maturing nephron	Ambiguous		GUDMAP:9039	expression uncertain due to inability to identify tubule subtype

GUDMAP:9516 ©

Specimen GUDMAP:9516: embryonic day 13.5 (more

)
Note: Labeling was visualized using NBT/BCIP. Annotators reported some background staining was observed on the surface of all tissues with this probe.

Structure	Level	Pattern	Image	Note
TS21: male reproductive system	Present	Regionally restricted	GUDMAP:9516
TS21: mesonephros of male	Present	Regionally restricted	GUDMAP:9516
TS21: mesonephric tubule of male	Present	Regionally restricted	GUDMAP:9516	the pattern is suggestive of expression in a subset of the mesonephric tubules
TS21: mesonephric mesenchyme of male	Absent		GUDMAP:9516
TS21: nephric duct of male, mesonephric portion	Absent		GUDMAP:9516
TS21: paramesonephric duct of male, mesonephric portion	Absent		GUDMAP:9516
TS21: coelomic epithelium of male mesonephros	Absent		GUDMAP:9516
TS21: nephric duct of male, rest of	Absent		GUDMAP:9516
TS21: epithelium of nephric duct of male	Absent		GUDMAP:9516
TS21: mesenchyme of nephric duct of male	Absent		GUDMAP:9516
TS21: paramesonephric duct of male, rest of	Absent		GUDMAP:9516
TS21: epithelium of rest of paramesonephric duct of male	Absent		GUDMAP:9516
TS21: mesenchyme of rest of paramesonephric duct of male	Absent		GUDMAP:9516
TS21: testis	Absent		GUDMAP:9516
TS21: coelomic epithelium of testis	Absent		GUDMAP:9516
TS21: interstitium of the testis	Absent		GUDMAP:9516
TS21: primary sex cord	Absent		GUDMAP:9516
TS21: germ cell of testis	Absent		GUDMAP:9516
TS21: rete testis	Absent		GUDMAP:9516
TS21: developing vasculature of testis	Absent		GUDMAP:9516
TS21: coelomic vessel	Absent		GUDMAP:9516
TS21: interstitial vessel	Absent		GUDMAP:9516

GUDMAP:9517 ©

Specimen GUDMAP:9517: embryonic day 13.5 (more

)
Note: Labeling was visualized using NBT/BCIP.

Structure	Level	Image	Note
TS21: female reproductive system	Ambiguous	GUDMAP:9517
TS21: mesonephros of female	Ambiguous	GUDMAP:9517	any signal seen may be background staining
TS21: ovary	Ambiguous	GUDMAP:9517	any signal seen may be background staining

GUDMAP:9518 ©

Specimen GUDMAP:9518: embryonic day 13.5 (more

)
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.

Structure	Level	Pattern	Image	Note
TS21: metanephros	Ambiguous		GUDMAP:9518	surface background staining was observed with this probe; there is no specific expression in the metanephros

GUDMAP:9519 ©

Specimen GUDMAP:9519: embryonic day 13.5 (more

)
Note: Labeling was visualized using NBT/BCIP.

Structure	Level	Image
TS21: ureter	Absent	GUDMAP:9519
TS21: urogenital sinus	Absent	GUDMAP:9519
TS21: primitive bladder	Absent	GUDMAP:9519

GUDMAP:13940 ©

Specimen GUDMAP:13940: postnatal adult (more

)
Note: This animal was sexually mature. Labeling was visualized using BM purple.

Structure	Level	Image
TS28: metanephros	Present	GUDMAP:13940
TS28: urinary system	Present	GUDMAP:13940
TS28: renal cortex	Present	GUDMAP:13940
TS28: cortical renal tubule	Present	GUDMAP:13940
TS28: renal proximal tubule	Present	GUDMAP:13940
TS28: renal proximal convoluted tubule	Present	GUDMAP:13940
TS28: proximal straight tubule, cortical portion	Ambiguous	GUDMAP:13940
TS28: mature renal corpuscle	Absent	GUDMAP:13940
TS28: cortical collecting duct	Absent	GUDMAP:13940
TS28: renal cortical interstitium	Absent	GUDMAP:13940
TS28: renal cortical vasculature	Absent	GUDMAP:13940
TS28: segment 1 of proximal tubule	Present	GUDMAP:13940
TS28: segment 2 of proximal tubule	Present	GUDMAP:13940
TS28: renal pelvis	Absent	GUDMAP:13940
TS28: renal medulla	Ambiguous	GUDMAP:13940
TS28: outer renal medulla	Ambiguous	GUDMAP:13940
TS28: inner renal medulla	Ambiguous	GUDMAP:13940

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