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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5541750
Gene symbol: Vdr
Gene name: vitamin D (1,25-dihydroxyvitamin D3) receptor
Probe: RIKEN clone 5131400H15 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:13935: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: metanephros Present GUDMAP:13935
TS23: urinary system Present GUDMAP:13935
TS23: renal cortex Present GUDMAP:13935
TS23: cortical renal tubule Present Regionally restricted GUDMAP:13935 Expression in a small subset of cortical renal tubules likely to include the early distal tubule and small subset of the early proximal tubule (S2, S3?)
TS23: nephrogenic zone Absent GUDMAP:13935
TS23: nephrogenic interstitium Absent GUDMAP:13935
TS23: cap mesenchyme Absent GUDMAP:13935
TS23: pretubular aggregate Absent GUDMAP:13935
TS23: ureteric tip Absent GUDMAP:13935
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:13935
TS23: renal vesicle Absent GUDMAP:13935
TS23: comma-shaped body Absent GUDMAP:13935
TS23: s-shaped body Absent GUDMAP:13935
TS23: capillary loop renal corpuscle Absent GUDMAP:13935
TS23: maturing renal corpuscle Absent GUDMAP:13935
TS23: cortical collecting duct Absent GUDMAP:13935
TS23: renal cortical interstitium Absent GUDMAP:13935
TS23: renal cortical vasculature Absent GUDMAP:13935
TS23: renal medulla Absent GUDMAP:13935
TS23: immature loop of Henle Absent GUDMAP:13935
TS23: medullary collecting duct Absent GUDMAP:13935
TS23: renal medullary interstitium Absent GUDMAP:13935
TS23: renal medullary vasculature Absent GUDMAP:13935
TS23: renal pelvis Absent GUDMAP:13935
TS23: pelvic urothelial lining Absent GUDMAP:13935
TS23: pelvic smooth muscle Absent GUDMAP:13935
TS23: perihilar interstitium Absent GUDMAP:13935
TS23: ureter Absent GUDMAP:13935
TS23: urothelium of ureter Absent GUDMAP:13935
TS23: ureteral mesenchyme Absent GUDMAP:13935
TS23: cortical early proximal tubule Present Regionally restricted GUDMAP:13935
TS23: cortical early distal tubule Present Regionally restricted GUDMAP:13935
TS23: cortical renal tubule of maturing nephron group Present GUDMAP:13935
TS23: early distal tubule of maturing nephron Present GUDMAP:13935
TS23: early proximal tubule of maturing nephron Present GUDMAP:13935
TS23: early proximal tubule of capillary loop nephron Absent GUDMAP:13935
TS23: anlage of loop of Henle of cortical renal tubule Absent GUDMAP:13935
TS23: early distal tubule of capillary loop nephron Absent GUDMAP:13935
TS23: renal connecting tubule Absent GUDMAP:13935
TS23: cortical renal tubule of capillary loop nephron group Absent GUDMAP:13935
Specimen GUDMAP:13936: embryonic day 17.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS25: urinary system Present GUDMAP:13936
TS25: metanephros Present GUDMAP:13936
TS25: renal cortex Present GUDMAP:13936
TS25: nephrogenic zone Absent GUDMAP:13936
TS25: renal medulla Absent GUDMAP:13936
TS25: renal pelvis Absent GUDMAP:13936
TS25: ureter Absent GUDMAP:13936
TS25: nephrogenic interstitium Absent GUDMAP:13936
TS25: cap mesenchyme Absent GUDMAP:13936
TS25: pretubular aggregate Absent GUDMAP:13936
TS25: ureteric tip Absent GUDMAP:13936
TS25: ureteric tree terminal branch excluding tip itself Absent GUDMAP:13936
TS25: pelvic urothelial lining Absent GUDMAP:13936
TS25: pelvic smooth muscle Absent GUDMAP:13936
TS25: perihilar interstitium Absent GUDMAP:13936
TS25: urothelium of ureter Absent GUDMAP:13936
TS25: lamina propria of ureter Absent GUDMAP:13936
TS25: ureteral smooth muscle layer Absent GUDMAP:13936
TS25: adventitia of ureter Absent GUDMAP:13936
TS25: ureteral vasculature Absent GUDMAP:13936
TS25: renal vesicle Absent GUDMAP:13936
TS25: comma-shaped body Absent GUDMAP:13936
TS25: s-shaped body Absent GUDMAP:13936
TS25: capillary loop renal corpuscle Absent GUDMAP:13936
TS25: maturing renal corpuscle Absent GUDMAP:13936
TS25: mature renal corpuscle Absent GUDMAP:13936
TS25: cortical collecting duct Absent GUDMAP:13936
TS25: renal cortical interstitium Absent GUDMAP:13936
TS25: renal cortical vasculature Absent GUDMAP:13936
TS25: cortical renal tubule Present Regionally restricted GUDMAP:13936 Regional expression in a subset of cortical renal tubules likely to include a subset of both the early distal and early proximal tubules. Expression is not detected in the presumptive S1 segment of the early proximal tubule adjacent to the renal corpuscle.
TS25: renal proximal tubule Present Regionally restricted GUDMAP:13936
TS25: renal distal tubule Present Regionally restricted GUDMAP:13936
TS25: anlage of loop of Henle of cortical renal tubule Absent GUDMAP:13936
TS25: renal connecting tubule Absent GUDMAP:13936
TS25: cortical renal tubule of capillary loop nephron group Absent GUDMAP:13936
Specimen GUDMAP:13937: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: metanephros Present GUDMAP:13937
TS28: urinary system Present GUDMAP:13937
TS28: renal cortex Present GUDMAP:13937
TS28: cortical renal tubule Present GUDMAP:13937
TS28: renal distal tubule Ambiguous GUDMAP:13937
TS28: distal straight tubule of renal cortex Ambiguous GUDMAP:13937
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory