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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540850
Gene symbol: Col6a1
Gene name: collagen, type VI, alpha 1
Probe: RIKEN clone 1110030D10 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:6994: postnatal adult (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP. Annotators reported some background staining.
Structure Level Pattern Image Note
TS28: testis Absent GUDMAP:6994
Specimen GUDMAP:7463: embryonic day 15.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS23: mesonephros of male Present GUDMAP:7463
TS23: mesonephric mesenchyme of male Present GUDMAP:7463
TS23: testis Present GUDMAP:7463
TS23: interstitium of the testis Present GUDMAP:7463
TS23: coelomic epithelium of testis Present GUDMAP:7463
TS23: coelomic epithelium of male mesonephros Present GUDMAP:7463
TS23: seminiferous cord Absent GUDMAP:7463
TS23: nephric duct of male, mesonephric portion Absent GUDMAP:7463
TS23: cranial mesonephric tubule of male Absent GUDMAP:7463
Specimen GUDMAP:7464: postnatal adult (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS28: female reproductive system Present GUDMAP:7464
TS28: ovary Present Regionally restricted GUDMAP:7464
TS28: ovary secondary follicle Present GUDMAP:7464
TS28: theca of secondary follicle Present GUDMAP:7464
TS28: ovary tertiary follicle Present GUDMAP:7464
TS28: theca of tertiary follicle Present GUDMAP:7464
TS28: corpus luteum Present Regionally restricted GUDMAP:7464 a subset of corpus lutea show expression
TS28: follicle cell of secondary follicle Present GUDMAP:7464
TS28: ovary primary follicle Absent GUDMAP:7464
TS28: ovary primordial follicle Absent GUDMAP:7464
TS28: oocyte of secondary follicle Absent GUDMAP:7464
TS28: oocyte of tertiary follicle Absent GUDMAP:7464
TS28: rest of oviduct Absent GUDMAP:7464
Specimen GUDMAP:8408: embryonic day 15.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS23: female reproductive system Present GUDMAP:8408
TS23: mesonephros of female Present Regionally restricted GUDMAP:8408
TS23: mesonephric mesenchyme of female Present GUDMAP:8408
TS23: coelomic epithelium of female mesonephros Present GUDMAP:8408
TS23: paramesonephric duct of female, mesonephric portion Present Regionally restricted GUDMAP:8408 signal absent from the epithelium
TS23: mesenchyme of paramesonephric duct of female, mesonephric portion Present GUDMAP:8408
TS23: ovary Present Regionally restricted GUDMAP:8408
TS23: mesenchymal stroma of ovary Present Regionally restricted GUDMAP:8408 signal detected in a subset of the stroma; strongest adjacent to the mesovarium
TS23: mesovarium Present GUDMAP:8408
TS23: degenerating mesonephric tubule of female Absent GUDMAP:8408
TS23: degenerating mesonephric portion of nephric duct of female Absent GUDMAP:8408
TS23: epithelium of paramesonephric duct of female, mesonephric portion Absent GUDMAP:8408
TS23: rete ovarii of mesonephros Absent GUDMAP:8408
TS23: surface epithelium of ovary Absent GUDMAP:8408
TS23: germ cell of ovary Absent GUDMAP:8408
TS23: developing vasculature of ovary Absent GUDMAP:8408
Specimen GUDMAP:8786: embryonic day 10.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Absent GUDMAP:8786
TS17: genitourinary system mesenchyme Absent GUDMAP:8786
TS17: gonad primordium Absent GUDMAP:8786
TS17: mesonephros Absent GUDMAP:8786
TS17: metanephric mesenchyme Absent GUDMAP:8786
TS17: nephric duct, metanephric portion Absent GUDMAP:8786
Specimen GUDMAP:8787: embryonic day 12.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: urinary system Present GUDMAP:8787
TS20: metanephros Present GUDMAP:8787
TS20: renal interstitium Present Regionally restricted GUDMAP:8787
TS20: primitive bladder Present GUDMAP:8787
TS20: urogenital mesentery Present GUDMAP:8787
TS20: urinary system mesentery Present GUDMAP:8787
TS20: cap mesenchyme Absent GUDMAP:8787
TS20: primitive collecting duct Absent GUDMAP:8787
TS20: early nephron Absent GUDMAP:8787
Specimen GUDMAP:8788: embryonic day 12.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: reproductive system Present GUDMAP:8788
TS20: female reproductive system Present GUDMAP:8788
TS20: mesonephros of female Present Regionally restricted GUDMAP:8788 signal restricted to the mesonephric mesenchyme; strongest surrounding the paramesonephric duct and adjacent to the ovary
TS20: mesonephric mesenchyme of female Present GUDMAP:8788
TS20: ovary Ambiguous GUDMAP:8788
TS20: paramesonephric duct of female, mesonephric portion Ambiguous GUDMAP:8788 signal appears restricted to the mesenchyme surrounding the duct
Specimen GUDMAP:8789: embryonic day 12.5 (more )
Note: This specimen was generated and annotated by the lab of Melissa H. Little, Murdoch Children's Research Institute. Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS20: reproductive system Present GUDMAP:8789
TS20: male reproductive system Present GUDMAP:8789
TS20: testis Present GUDMAP:8789
TS20: interstitium of the testis Present GUDMAP:8789
TS20: mesonephros of male Present GUDMAP:8789 signal appears to be restricted to the mesonephric mesenchyme; strongest in between the nephric and paramesonephric ducts and adjacent to the testis
TS20: mesonephric mesenchyme of male Present GUDMAP:8789
TS20: mesonephric tubule of male Absent GUDMAP:8789
TS20: nephric duct of male, mesonephric portion Ambiguous GUDMAP:8789 signal is likely to be restricted to the mesenchyme surrounding the duct
TS20: paramesonephric duct of male, mesonephric portion Ambiguous GUDMAP:8789
TS20: coelomic epithelium of testis Ambiguous GUDMAP:8789
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/30/2025
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