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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540837
Gene symbol: Lix1l
Gene name: Lix1-like
Probe: RIKEN clone D130027M04 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9788: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:9788
TS23: metanephros Present Regionally restricted GUDMAP:9788
TS23: nephrogenic zone Present Regionally restricted GUDMAP:9788
TS23: nephrogenic interstitium Present Regionally restricted GUDMAP:9788
TS23: renal cortex Present Regionally restricted GUDMAP:9788
TS23: renal cortical interstitium Present GUDMAP:9788
TS23: renal medulla Present Regionally restricted GUDMAP:9788
TS23: renal medullary interstitium Present GUDMAP:9788
TS23: renal pelvis Present Regionally restricted GUDMAP:9788
TS23: pelvic smooth muscle Present GUDMAP:9788
TS23: ureter Present Regionally restricted GUDMAP:9788
TS23: ureteral mesenchyme Present GUDMAP:9788
TS23: ureteral smooth muscle layer Present GUDMAP:9788
TS23: renal interstitium Present GUDMAP:9788
TS23: maturing renal corpuscle Present GUDMAP:9788
TS23: maturing glomerular tuft Present GUDMAP:9788
TS23: glomerular mesangium of maturing glomerular tuft Present GUDMAP:9788
TS23: maturing nephron Present GUDMAP:9788
TS23: ureteric tip Absent GUDMAP:9788
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:9788
TS23: renal vesicle Absent GUDMAP:9788
TS23: comma-shaped body Absent GUDMAP:9788
TS23: s-shaped body Absent GUDMAP:9788
TS23: capillary loop renal corpuscle Absent GUDMAP:9788
TS23: cortical renal tubule Absent GUDMAP:9788
TS23: cortical collecting duct Absent GUDMAP:9788
TS23: renal cortical capillary Absent GUDMAP:9788
TS23: immature loop of Henle Absent GUDMAP:9788
TS23: renal medullary capillary Absent GUDMAP:9788
TS23: medullary collecting duct Absent GUDMAP:9788
TS23: pelvic urothelial lining Absent GUDMAP:9788
TS23: urothelium of ureter Absent GUDMAP:9788
TS23: developing capillary loop stage nephron group Absent GUDMAP:9788
TS23: collecting duct Absent GUDMAP:9788
TS23: early nephron Absent GUDMAP:9788
TS23: late tubule Absent GUDMAP:9788
TS23: cap mesenchyme Ambiguous GUDMAP:9788 expression likely to be background staining from the adjacent nephrogenic interstitium
TS23: renal medullary vasculature Ambiguous GUDMAP:9788 possible expression
TS23: renal cortical vasculature Ambiguous GUDMAP:9788 possible expression
TS23: perihilar interstitium Ambiguous GUDMAP:9788 possible weak spotted expression
TS23: ureteral mesenchyme outer layer Ambiguous GUDMAP:9788

Specimen GUDMAP:9789: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Present Regionally restricted GUDMAP:9789
TS23: ureteral mesenchyme Present GUDMAP:9789
TS23: ureteral smooth muscle layer Present GUDMAP:9789
TS23: urothelium of ureter Absent GUDMAP:9789
TS23: ureteral mesenchyme outer layer Ambiguous GUDMAP:9789 possible weak spotted expression

Specimen GUDMAP:9790: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: metanephros Absent GUDMAP:9790
TS28: ureter Absent GUDMAP:9790

Specimen GUDMAP:9791: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: ureter Absent GUDMAP:9791

Specimen GUDMAP:9947: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present GUDMAP:9947
TS17: genitourinary system mesenchyme Present GUDMAP:9947
TS17: mesonephros Present Regionally restricted GUDMAP:9947
TS17: mesonephros mesenchyme Present GUDMAP:9947
TS17: metanephric mesenchyme Present GUDMAP:9947
TS17: mesonephric tubule Absent GUDMAP:9947
TS17: nephric duct, mesonephric portion Absent GUDMAP:9947
TS17: nephric duct, metanephric portion Absent GUDMAP:9947

Specimen GUDMAP:9948: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present GUDMAP:9948
TS21: mesonephros of male Present Regionally restricted GUDMAP:9948
TS21: mesonephric mesenchyme of male Present GUDMAP:9948
TS21: testis Present Regionally restricted GUDMAP:9948
TS21: interstitium of the testis Present GUDMAP:9948
TS21: paramesonephric duct of male, mesonephric portion Present GUDMAP:9948
TS21: mesonephric tubule of male Absent GUDMAP:9948
TS21: primary sex cord Absent GUDMAP:9948
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:9948 expression uncertain due to the strong mesonephric mesenchyme expression
TS21: nephric duct of male, rest of Ambiguous GUDMAP:9948 expression uncertain
TS21: paramesonephric duct of male, rest of Ambiguous GUDMAP:9948 expression uncertain

Specimen GUDMAP:9949: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urogenital sinus Present Regionally restricted GUDMAP:9949
TS21: primitive bladder Present Regionally restricted GUDMAP:9949
TS21: mesenchymal layer of primitive bladder Present GUDMAP:9949
TS21: urothelium of primitive bladder Absent GUDMAP:9949

Specimen GUDMAP:9950: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:9950
TS21: mesonephros of female Present Regionally restricted GUDMAP:9950
TS21: mesonephric mesenchyme of female Present GUDMAP:9950
TS21: ovary Present Regionally restricted GUDMAP:9950
TS21: mesonephric tubule of female Absent GUDMAP:9950
TS21: nephric duct of female, mesonephric portion Ambiguous GUDMAP:9950 expression uncertain due to the heavy mesonephric mesenchyme expression
TS21: paramesonephric duct of female, mesonephric portion Ambiguous GUDMAP:9950 expression possible
TS21: nephric duct of female, rest of Ambiguous GUDMAP:9950 expression uncertain
TS21: paramesonephric duct of female, rest of Ambiguous GUDMAP:9950 expression uncertain

Specimen GUDMAP:9951: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:9951
TS21: metanephros Present Regionally restricted GUDMAP:9951
TS21: renal interstitium Present GUDMAP:9951
TS21: cap mesenchyme Absent GUDMAP:9951
TS21: ureteric tip Absent GUDMAP:9951
TS21: ureter Ambiguous GUDMAP:9951 expression possible but not definite due to the strong background staining


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last database update
04/30/2024
MGI 6.23
The Jackson Laboratory