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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540815
Gene symbol: Emilin1
Gene name: elastin microfibril interfacer 1
Probe: RIKEN clone E430034M11 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9912: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present GUDMAP:9912
TS17: genitourinary system mesenchyme Present GUDMAP:9912
TS17: mesonephros Present Regionally restricted GUDMAP:9912
TS17: mesonephros mesenchyme Present GUDMAP:9912
TS17: mesonephric tubule Absent GUDMAP:9912
TS17: nephric duct, mesonephric portion Absent GUDMAP:9912
TS17: metanephric mesenchyme Absent GUDMAP:9912
TS17: nephric duct, metanephric portion Absent GUDMAP:9912
Specimen GUDMAP:9913: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present GUDMAP:9913
TS21: mesonephros of male Present Regionally restricted GUDMAP:9913
TS21: mesonephric mesenchyme of male Present GUDMAP:9913
TS21: paramesonephric duct of male, mesonephric portion Present GUDMAP:9913 expression in the mesenchyme surrounding the duct
TS21: paramesonephric duct of male, rest of Present GUDMAP:9913
TS21: mesenchyme of rest of paramesonephric duct of male Present GUDMAP:9913
TS21: testis Present Regionally restricted GUDMAP:9913
TS21: coelomic epithelium of testis Present GUDMAP:9913
TS21: interstitium of the testis Present GUDMAP:9913 regional expression in the interstitium, strongest in the coelomic domain
TS21: mesonephric tubule of male Absent GUDMAP:9913
TS21: coelomic epithelium of male mesonephros Absent GUDMAP:9913
TS21: primary sex cord Absent GUDMAP:9913
TS21: epithelium of rest of paramesonephric duct of male Absent GUDMAP:9913
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:9913 possible expression in mesenchyme surrounding duct
TS21: developing vasculature of testis Ambiguous GUDMAP:9913 expression in the vasculature or in the interstitium associated with the vasculature
Specimen GUDMAP:9914: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:9914
TS21: mesonephros of female Present Regionally restricted GUDMAP:9914
TS21: mesonephric mesenchyme of female Present GUDMAP:9914
TS21: paramesonephric duct of female, rest of Present GUDMAP:9914
TS21: mesenchyme of rest of paramesonephric duct of female Present GUDMAP:9914
TS21: ovary Present Regionally restricted GUDMAP:9914
TS21: mesenchymal stroma of ovary Present GUDMAP:9914
TS21: mesonephric tubule of female Absent GUDMAP:9914
TS21: coelomic epithelium of female mesonephros Absent GUDMAP:9914
TS21: germ cell of ovary Absent GUDMAP:9914
TS21: epithelium of rest of paramesonephric duct of female Absent GUDMAP:9914
TS21: nephric duct of female, mesonephric portion Ambiguous GUDMAP:9914 expression uncertain, could be masked by the expression in the mesenchyme
TS21: paramesonephric duct of female, mesonephric portion Ambiguous GUDMAP:9914 expression uncertain, could be masked by the expression in the mesenchyme
Specimen GUDMAP:9915: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:9915
TS21: metanephros Present Regionally restricted GUDMAP:9915 expression likely in early tubules (early nephrons) as well as another unidentifiable structure
TS21: renal interstitium Present GUDMAP:9915
TS21: ureter Present GUDMAP:9915
TS21: urogenital mesentery Absent GUDMAP:9915
TS21: cap mesenchyme Absent GUDMAP:9915
TS21: early nephron Ambiguous GUDMAP:9915 expression uncertain
Specimen GUDMAP:9916: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:9916
TS21: ureter Present GUDMAP:9916
TS21: urogenital sinus Present Regionally restricted GUDMAP:9916
TS21: primitive bladder Present GUDMAP:9916 expression seen on the surface
Specimen GUDMAP:10832: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 130 hrs. However, expression could not be detected. Thus, low levels of expression are not detectable in this experiment.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:10832
TS23: metanephros Present Regionally restricted GUDMAP:10832
TS23: nephrogenic zone Present Regionally restricted GUDMAP:10832
TS23: nephrogenic interstitium Present GUDMAP:10832 very strong expression
TS23: renal cortex Present Regionally restricted GUDMAP:10832
TS23: capillary loop renal corpuscle Present Regionally restricted GUDMAP:10832 very weak regional expression
TS23: maturing renal corpuscle Present Regionally restricted GUDMAP:10832 very weak regional expression in maturing glomerular tuft
TS23: maturing glomerular tuft Present Regionally restricted GUDMAP:10832
TS23: renal cortical interstitium Present Graded GUDMAP:10832 regional moderate to strong expression with graded signal strength strongest adjacent to nephrogenic zone and surrounding cortical renal tubules and cortical collecting duct
TS23: renal medulla Present Regionally restricted GUDMAP:10832
TS23: renal medullary interstitium Present Graded GUDMAP:10832 moderate graded expression with strongest expression surrounding medullary collecting ducts and immature loop of Henle
TS23: renal pelvis Present Regionally restricted GUDMAP:10832
TS23: pelvic smooth muscle Present GUDMAP:10832 very strong expression
TS23: perihilar interstitium Present GUDMAP:10832 moderate expression
TS23: ureter Present Regionally restricted GUDMAP:10832
TS23: ureteral mesenchyme Present GUDMAP:10832 very strong expression
TS23: ureteral smooth muscle layer Present GUDMAP:10832
TS23: ureteral mesenchyme outer layer Present GUDMAP:10832 moderate expression
TS23: renal interstitium Present GUDMAP:10832 graded expression in different regions of the metanephros
TS23: cap mesenchyme Absent GUDMAP:10832
TS23: pretubular aggregate Absent GUDMAP:10832
TS23: ureteric tip Absent GUDMAP:10832
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:10832
TS23: renal vesicle Absent GUDMAP:10832
TS23: comma-shaped body Absent GUDMAP:10832
TS23: s-shaped body Absent GUDMAP:10832
TS23: parietal epithelium of capillary loop renal corpuscle Absent GUDMAP:10832
TS23: Bowman's capsule of maturing renal corpuscle Absent GUDMAP:10832
TS23: cortical renal tubule Absent GUDMAP:10832
TS23: cortical collecting duct Absent GUDMAP:10832
TS23: immature loop of Henle Absent GUDMAP:10832
TS23: medullary collecting duct Absent GUDMAP:10832
TS23: pelvic urothelial lining Absent GUDMAP:10832
TS23: urothelium of ureter Absent GUDMAP:10832
TS23: visceral epithelium of capillary loop renal corpuscle Ambiguous GUDMAP:10832
TS23: presumptive mesangium of capillary loop renal corpuscle Ambiguous GUDMAP:10832
TS23: presumptive endothelium of capillary loop renal corpuscle Ambiguous GUDMAP:10832
TS23: associated interstitium of capillary loop renal corpuscle Ambiguous GUDMAP:10832
TS23: glomerular capillary system of maturing glomerular tuft Ambiguous GUDMAP:10832
TS23: glomerular basement membrane of maturing renal corpuscle Ambiguous GUDMAP:10832
TS23: glomerular mesangium of maturing glomerular tuft Ambiguous GUDMAP:10832
TS23: visceral epithelium of maturing renal corpuscle Ambiguous GUDMAP:10832
Specimen GUDMAP:10833: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 130 hrs. However, expression could not be detected. Thus, low levels of expression are not detectable in this experiment.
Structure Level Pattern Image Note
TS23: ureter Present Regionally restricted GUDMAP:10833 graded expression
TS23: ureteral mesenchyme Present GUDMAP:10833 very strong expression
TS23: ureteral smooth muscle layer Present GUDMAP:10833
TS23: ureteral mesenchyme outer layer Present GUDMAP:10833 moderate expression
TS23: urothelium of ureter Absent GUDMAP:10833
Specimen GUDMAP:10834: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 130 hrs. However, expression could not be detected. Thus, low levels of expression are not detectable in this experiment.
Structure Level Pattern Image Note
TS23: bladder Present Regionally restricted GUDMAP:10834
TS23: lamina propria of bladder Present GUDMAP:10834
TS23: detrusor muscle of bladder Present GUDMAP:10834
TS23: serosa of bladder Present GUDMAP:10834
TS23: adventitia of bladder Present GUDMAP:10834
TS23: vasculature of bladder Present GUDMAP:10834
TS23: urothelium of bladder Absent GUDMAP:10834
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/07/2024
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