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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540749
Gene symbol: Slc6a20b
Gene name: solute carrier family 6 (neurotransmitter transporter), member 20B
Probe: RIKEN clone F520006C14 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9036: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urinary system Present Regionally restricted GUDMAP:9036
TS23: metanephros Present Regionally restricted GUDMAP:9036
TS23: renal cortex Present Regionally restricted GUDMAP:9036
TS23: cortical renal tubule Present Regionally restricted GUDMAP:9036
TS23: cortical early proximal tubule Present Regionally restricted GUDMAP:9036 expression detected in a subset of early proximal tubules of maturing nephrons only; likely absent from segment 1 at the urinary pole of maturing renal corpuscles
TS23: maturing nephron Present Regionally restricted GUDMAP:9036
TS23: late tubule Present GUDMAP:9036
TS23: renal capsule Absent GUDMAP:9036
TS23: nephrogenic zone Absent GUDMAP:9036
TS23: nephrogenic interstitium Absent GUDMAP:9036
TS23: cap mesenchyme Absent GUDMAP:9036
TS23: pretubular aggregate Absent GUDMAP:9036
TS23: ureteric tip Absent GUDMAP:9036
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:9036
TS23: renal vesicle Absent GUDMAP:9036
TS23: comma-shaped body Absent GUDMAP:9036
TS23: upper limb of comma-shaped body Absent GUDMAP:9036
TS23: lower limb of comma-shaped body Absent GUDMAP:9036
TS23: s-shaped body Absent GUDMAP:9036
TS23: renal connecting tubule of s-shaped body Absent GUDMAP:9036
TS23: distal segment of s-shaped body Absent GUDMAP:9036
TS23: medial segment of s-shaped body Absent GUDMAP:9036
TS23: proximal segment of s-shaped body Absent GUDMAP:9036
TS23: visceral epithelium of s-shaped body Absent GUDMAP:9036
TS23: parietal epithelium of s-shaped body Absent GUDMAP:9036
TS23: capillary loop renal corpuscle Absent GUDMAP:9036
TS23: visceral epithelium of capillary loop renal corpuscle Absent GUDMAP:9036
TS23: parietal epithelium of capillary loop renal corpuscle Absent GUDMAP:9036
TS23: presumptive mesangium of capillary loop renal corpuscle Absent GUDMAP:9036
TS23: presumptive endothelium of capillary loop renal corpuscle Absent GUDMAP:9036
TS23: associated interstitium of capillary loop renal corpuscle Absent GUDMAP:9036
TS23: maturing renal corpuscle Absent GUDMAP:9036
TS23: maturing glomerular tuft Absent GUDMAP:9036
TS23: glomerular capillary system of maturing glomerular tuft Absent GUDMAP:9036
TS23: glomerular basement membrane of maturing renal corpuscle Absent GUDMAP:9036
TS23: glomerular mesangium of maturing glomerular tuft Absent GUDMAP:9036
TS23: visceral epithelium of maturing renal corpuscle Absent GUDMAP:9036
TS23: Bowman's capsule of maturing renal corpuscle Absent GUDMAP:9036
TS23: parietal epithelium of maturing renal corpuscle Absent GUDMAP:9036
TS23: glomerular mesangium of maturing renal corpuscle Absent GUDMAP:9036
TS23: juxtaglomerular arteriole Absent GUDMAP:9036
TS23: renal medullary interstitium Absent GUDMAP:9036
TS23: renal medullary vasculature Absent GUDMAP:9036
TS23: renal medullary arterial system Absent GUDMAP:9036
TS23: renal medullary venous system Absent GUDMAP:9036
TS23: renal medullary capillary Absent GUDMAP:9036
TS23: medullary collecting duct Absent GUDMAP:9036
TS23: renal calyx Absent GUDMAP:9036
TS23: renal pelvis Absent GUDMAP:9036
TS23: pelvic urothelial lining Absent GUDMAP:9036
TS23: pelvic smooth muscle Absent GUDMAP:9036
TS23: perihilar interstitium Absent GUDMAP:9036
TS23: collecting duct Absent GUDMAP:9036
TS23: renal interstitium Absent GUDMAP:9036
TS23: renal vasculature Absent GUDMAP:9036
TS23: early nephron Absent GUDMAP:9036
TS23: cortical collecting duct Absent GUDMAP:9036
TS23: renal cortical interstitium Absent GUDMAP:9036
TS23: renal cortical vasculature Absent GUDMAP:9036
TS23: renal cortical arterial system Absent GUDMAP:9036
TS23: renal cortical venous system Absent GUDMAP:9036
TS23: renal cortical capillary Absent GUDMAP:9036
TS23: anlage of loop of Henle of cortical renal tubule Absent GUDMAP:9036
TS23: renal medulla Absent GUDMAP:9036
TS23: immature loop of Henle Absent GUDMAP:9036
TS23: developing capillary loop stage nephron group Absent GUDMAP:9036
TS23: renal connecting tubule Absent GUDMAP:9036
TS23: cortical early distal tubule Ambiguous GUDMAP:9036 expression uncertain due to inability to identify tubule subtype; expression absent from early distal tubules of capillary loop nephrons
TS23: cortical renal tubule of maturing nephron group Present GUDMAP:9036
TS23: early proximal tubule of maturing nephron Present GUDMAP:9036
TS23: distal renal vesicle Absent GUDMAP:9036
TS23: proximal renal vesicle Absent GUDMAP:9036
TS23: renal connecting segment of renal vesicle Absent GUDMAP:9036
TS23: renal connecting segment of comma-shaped body Absent GUDMAP:9036
TS23: cortical renal tubule of capillary loop nephron group Absent GUDMAP:9036
TS23: early distal tubule of capillary loop nephron Absent GUDMAP:9036
TS23: early proximal tubule of capillary loop nephron Absent GUDMAP:9036
TS23: renal connecting tubule of capillary loop nephron Absent GUDMAP:9036
TS23: renal connecting tubule of maturing nephron Absent GUDMAP:9036
TS23: early distal tubule of maturing nephron Ambiguous GUDMAP:9036 expression uncertain due to inability to identify tubule subtype
Specimen GUDMAP:9037: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Absent GUDMAP:9037
TS23: urothelium of ureter Absent GUDMAP:9037
TS23: superficial cell layer of ureter Absent GUDMAP:9037
TS23: intermediate cell layer of ureter Absent GUDMAP:9037
TS23: basal cell layer of ureter Absent GUDMAP:9037
TS23: ureteral mesenchyme Absent GUDMAP:9037
TS23: ureteral mesenchyme subepithelial layer Absent GUDMAP:9037
TS23: ureteral smooth muscle layer Absent GUDMAP:9037
TS23: ureteral smooth muscle layer smooth muscle component Absent GUDMAP:9037
TS23: ureteral smooth muscle layer interstitium Absent GUDMAP:9037
TS23: ureteral mesenchyme outer layer Absent GUDMAP:9037
TS23: ureteral vasculature Absent GUDMAP:9037
Specimen GUDMAP:9482: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system mesenchyme Absent GUDMAP:9482
TS17: gonad primordium Absent GUDMAP:9482
TS17: nephric duct, mesonephric portion Absent GUDMAP:9482
TS17: nephric duct, metanephric portion Absent GUDMAP:9482
TS17: mesonephric tubule Ambiguous GUDMAP:9482 possible very weak expression
TS17: mesonephros Ambiguous GUDMAP:9482
TS17: mesonephros mesenchyme Ambiguous GUDMAP:9482 signal seen is likely to be background staining
TS17: metanephric mesenchyme Ambiguous GUDMAP:9482 signal seen is likely to be background staining
Specimen GUDMAP:9483: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:9483
TS21: mesonephros of male Present Regionally restricted GUDMAP:9483
TS21: mesonephric tubule of male Present GUDMAP:9483
TS21: nephric duct of male, mesonephric portion Present GUDMAP:9483
TS21: nephric duct of male, rest of Present GUDMAP:9483
TS21: epithelium of nephric duct of male Present GUDMAP:9483
TS21: testis Present Regionally restricted GUDMAP:9483
TS21: primary sex cord Present GUDMAP:9483
TS21: mesonephric mesenchyme of male Absent GUDMAP:9483
TS21: paramesonephric duct of male, mesonephric portion Absent GUDMAP:9483
TS21: coelomic epithelium of male mesonephros Absent GUDMAP:9483
TS21: mesenchyme of nephric duct of male Absent GUDMAP:9483
TS21: paramesonephric duct of male, rest of Absent GUDMAP:9483
TS21: coelomic epithelium of testis Absent GUDMAP:9483
TS21: interstitium of the testis Absent GUDMAP:9483
TS21: developing vasculature of testis Absent GUDMAP:9483
Specimen GUDMAP:9484: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urinary system Ambiguous GUDMAP:9484
TS21: metanephros Ambiguous GUDMAP:9484 possible ubiquitous expression with no obvious regional pattern of expression
Specimen GUDMAP:9485: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the bladder is identical to female.
Structure Level Pattern Image Note
TS21: ureter Absent GUDMAP:9485
TS21: primitive bladder Absent GUDMAP:9485
Specimen GUDMAP:9486: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:9486
TS21: ovary Present GUDMAP:9486
TS21: mesonephros of female Ambiguous GUDMAP:9486 signal seen is likely to be background staining as it is only seen in one of the ovaries
Specimen GUDMAP:9487: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: urogenital mesentery Absent GUDMAP:9487
TS21: metanephros Absent GUDMAP:9487
TS21: ureter Absent GUDMAP:9487
Specimen GUDMAP:10929: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: urinary system Present GUDMAP:10929
TS28: metanephros Present Regionally restricted GUDMAP:10929
TS28: renal cortex Present Regionally restricted GUDMAP:10929
TS28: cortical renal tubule Present Regionally restricted GUDMAP:10929
TS28: renal proximal tubule Present Regionally restricted GUDMAP:10929
TS28: renal proximal convoluted tubule Present Regionally restricted GUDMAP:10929 graded expression; expression absent from a small subset of renal proximal convoluted tubules likely including at least a portion of S1
TS28: segment 1 of proximal tubule Present Regionally restricted GUDMAP:10929 expression absent from a small subset of renal proximal convoluted tubules likely including at least a portion of S1
TS28: segment 2 of proximal tubule Present GUDMAP:10929
TS28: proximal straight tubule, cortical portion Present GUDMAP:10929
TS28: renal medulla Present Regionally restricted GUDMAP:10929
TS28: outer renal medulla Present Regionally restricted GUDMAP:10929
TS28: outer stripe of outer medulla Present Regionally restricted GUDMAP:10929
TS28: loop of Henle of outer stripe of outer medulla Present Regionally restricted GUDMAP:10929
TS28: proximal straight tubule of outer stripe of outer medulla Present GUDMAP:10929
TS28: mature renal corpuscle Absent GUDMAP:10929
TS28: renal distal tubule Absent GUDMAP:10929
TS28: renal connecting tubule Absent GUDMAP:10929
TS28: cortical collecting duct Absent GUDMAP:10929
TS28: renal cortical interstitium Absent GUDMAP:10929
TS28: renal cortical vasculature Absent GUDMAP:10929
TS28: inner renal medulla Absent GUDMAP:10929
TS28: renal pelvis Absent GUDMAP:10929
TS28: distal straight tubule of outer stripe of outer medulla Absent GUDMAP:10929
TS28: inner stripe of outer medulla Absent GUDMAP:10929
TS28: outer medullary collecting duct Absent GUDMAP:10929
TS28: outer medullary interstitium Absent GUDMAP:10929
Specimen GUDMAP:10930: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: ureter Absent GUDMAP:10930
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/14/2024
MGI 6.23 		The Jackson Laboratory