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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540737
Gene symbol: Slc3a1
Gene name: solute carrier family 3, member 1
Probe: RIKEN clone 3830420H12 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9488: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Ambiguous GUDMAP:9488 either weak ubiquitous expression or background signal
Specimen GUDMAP:9489: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:9489
TS21: mesonephros of male Present Regionally restricted GUDMAP:9489
TS21: testis Present Regionally restricted GUDMAP:9489
TS21: primary sex cord Present GUDMAP:9489
TS21: mesonephric tubule of male Ambiguous GUDMAP:9489
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:9489
TS21: coelomic epithelium of male mesonephros Ambiguous GUDMAP:9489
TS21: nephric duct of male, rest of Ambiguous GUDMAP:9489
TS21: mesenchyme of nephric duct of male Ambiguous GUDMAP:9489
TS21: mesenchyme of rest of paramesonephric duct of male Ambiguous GUDMAP:9489
TS21: coelomic epithelium of testis Ambiguous GUDMAP:9489
TS21: interstitium of the testis Ambiguous GUDMAP:9489
TS21: developing vasculature of testis Ambiguous GUDMAP:9489
TS21: mesonephric mesenchyme of male Ambiguous GUDMAP:9489
Specimen GUDMAP:9490: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the bladder is identical to female.
Structure Level Pattern Image Note
TS21: urogenital sinus Ambiguous GUDMAP:9490
TS21: primitive bladder Ambiguous GUDMAP:9490 signal is either weak ubiquitous expression or background signal
Specimen GUDMAP:9491: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:9491
TS21: mesonephros of female Present GUDMAP:9491
TS21: paramesonephric duct of female, mesonephric portion Present GUDMAP:9491
TS21: paramesonephric duct of female, rest of Present GUDMAP:9491
TS21: epithelium of rest of paramesonephric duct of female Present GUDMAP:9491
TS21: ovary Present GUDMAP:9491
TS21: mesonephric mesenchyme of female Ambiguous GUDMAP:9491
TS21: mesonephric tubule of female Ambiguous GUDMAP:9491
TS21: nephric duct of female, mesonephric portion Ambiguous GUDMAP:9491
TS21: coelomic epithelium of female mesonephros Ambiguous GUDMAP:9491
TS21: nephric duct of female, rest of Ambiguous GUDMAP:9491
TS21: mesenchyme of nephric duct of female Ambiguous GUDMAP:9491
TS21: mesenchyme of rest of paramesonephric duct of female Ambiguous GUDMAP:9491
Specimen GUDMAP:9492: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the female is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urogenital mesentery Ambiguous GUDMAP:9492
TS21: metanephros Ambiguous GUDMAP:9492 signal is either weak ubiquitous expression or background signal
Specimen GUDMAP:10936: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: urinary system Present GUDMAP:10936
TS28: metanephros Present Regionally restricted GUDMAP:10936
TS28: renal cortex Present Regionally restricted GUDMAP:10936
TS28: cortical renal tubule Present Regionally restricted GUDMAP:10936
TS28: renal proximal tubule Present Regionally restricted GUDMAP:10936
TS28: proximal straight tubule, cortical portion Present GUDMAP:10936
TS28: renal medulla Present Regionally restricted GUDMAP:10936
TS28: outer renal medulla Present Regionally restricted GUDMAP:10936
TS28: outer stripe of outer medulla Present Regionally restricted GUDMAP:10936
TS28: loop of Henle of outer stripe of outer medulla Present Regionally restricted GUDMAP:10936
TS28: proximal straight tubule of outer stripe of outer medulla Present GUDMAP:10936
TS28: renal proximal convoluted tubule Present Regionally restricted GUDMAP:10936
TS28: segment 2 of proximal tubule Present Regionally restricted GUDMAP:10936 regional expression. It is likely that for some nephrons there is expression in a subset of S2 adjacent to S3.
TS28: mature renal corpuscle Absent GUDMAP:10936
TS28: segment 1 of proximal tubule Absent GUDMAP:10936
TS28: renal distal tubule Absent GUDMAP:10936
TS28: cortical collecting duct Absent GUDMAP:10936
TS28: renal connecting tubule Absent GUDMAP:10936
TS28: renal cortical interstitium Absent GUDMAP:10936
TS28: renal cortical vasculature Absent GUDMAP:10936
TS28: distal straight tubule of outer stripe of outer medulla Absent GUDMAP:10936
TS28: inner stripe of outer medulla Absent GUDMAP:10936
TS28: outer medullary collecting duct Absent GUDMAP:10936
TS28: outer medullary interstitium Absent GUDMAP:10936
TS28: inner renal medulla Absent GUDMAP:10936
TS28: renal pelvis Absent GUDMAP:10936
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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