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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540715
Gene symbol: Itga9
Gene name: integrin alpha 9
Probe: RIKEN clone D130073C02 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:9733: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present Regionally restricted GUDMAP:9733
TS17: genitourinary system mesenchyme Present GUDMAP:9733
TS17: mesonephros Present Regionally restricted GUDMAP:9733
TS17: mesonephros mesenchyme Present GUDMAP:9733
TS17: metanephric mesenchyme Present GUDMAP:9733
TS17: mesonephric tubule Absent GUDMAP:9733
TS17: nephric duct, mesonephric portion Absent GUDMAP:9733
TS17: nephric duct, metanephric portion Absent GUDMAP:9733

Specimen GUDMAP:9734: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present Regionally restricted GUDMAP:9734
TS21: mesonephros of male Present Regionally restricted GUDMAP:9734
TS21: mesonephric mesenchyme of male Present GUDMAP:9734
TS21: testis Present Regionally restricted GUDMAP:9734
TS21: interstitium of the testis Present GUDMAP:9734
TS21: paramesonephric duct of male, mesonephric portion Absent GUDMAP:9734
TS21: mesonephric tubule of male Absent GUDMAP:9734
TS21: primary sex cord Absent GUDMAP:9734
TS21: coelomic epithelium of testis Absent GUDMAP:9734
TS21: nephric duct of male, mesonephric portion Ambiguous GUDMAP:9734 expression likely restricted to the mesenchyme surrounding the duct epithelium
TS21: nephric duct of male, rest of Ambiguous GUDMAP:9734 weak expression
TS21: paramesonephric duct of male, rest of Ambiguous GUDMAP:9734 weak expression

Specimen GUDMAP:9735: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present Regionally restricted GUDMAP:9735
TS21: metanephros Present Regionally restricted GUDMAP:9735
TS21: nephrogenic interstitium Present GUDMAP:9735
TS21: renal interstitium Present GUDMAP:9735
TS21: cap mesenchyme Absent GUDMAP:9735
TS21: ureteric tip Absent GUDMAP:9735
TS21: ureter Absent GUDMAP:9735

Specimen GUDMAP:9736: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present Regionally restricted GUDMAP:9736
TS21: mesonephros of female Present Regionally restricted GUDMAP:9736
TS21: mesonephric mesenchyme of female Present GUDMAP:9736
TS21: ovary Present GUDMAP:9736 weak expression
TS21: mesenchymal stroma of ovary Present GUDMAP:9736 weak expression
TS21: mesonephric tubule of female Absent GUDMAP:9736
TS21: paramesonephric duct of female, mesonephric portion Absent GUDMAP:9736

Specimen GUDMAP:9737: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: primitive bladder Ambiguous GUDMAP:9737 weak expression possible

Specimen GUDMAP:10763: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs, but no expression was detected. Thus, it is possible that very weak levels of gene expression were not detectable in this experiment.
Structure Level Pattern Image Note
TS23: metanephros Ambiguous GUDMAP:10763 strong ubiquitous expression or background staining
TS23: ureter Ambiguous GUDMAP:10763 strong ubiquitous expression or background staining

Specimen GUDMAP:10764: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs, but no expression was detected. Thus, it is possible that very weak levels of gene expression were not detectable in this experiment.
Structure Level Pattern Image Note
TS23: ureter Ambiguous GUDMAP:10764 strong ubiquitous expression or background staining

Specimen GUDMAP:10765: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs but no expression was detected. Thus it is possible that very weak levels of expression were not detected.
Structure Level Pattern Image Note
TS28: metanephros Absent GUDMAP:10765


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/16/2024
MGI 6.23
The Jackson Laboratory