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Gene Expression Data
Assay Details
Assay
Reference: J:141833 Doering JE, et al., Species differences in the expression of Ahi1, a protein implicated in the neurodevelopmental disorder Joubert syndrome, with preferential accumulation to stigmoid bodies. J Comp Neurol. 2008 Nov 10;511(2):238-56
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5526005
Gene symbol: Ahi1
Gene name: Abelson helper integration site 1
Antibody: Ab-05/06
Detection system: Secondary antibody
Results
Specimen 1A: postnatal (more )
Structure Level Pattern Image Note
TS28: hypothalamus Present 1A

Specimen 3A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brainstem Present 3A
TS20: hypothalamus Present 3A
TS20: spinal cord Present 3A
TS20: midbrain Present Regionally restricted 3A Expression is in the tectum.
TS20: cerebellum primordium Absent 3A
TS20: cortical plate Absent 3A

Specimen 3B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brainstem Present 3B
TS20: hypothalamus Present 3B
TS20: spinal cord Present 3B
TS20: midbrain Present Regionally restricted 3B Expression is in the tectum.
TS20: cerebellum primordium Absent 3B
TS20: cortical plate Absent 3B

Specimen 3C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: amygdala Present 3C
TS22: brainstem Present 3C
TS22: hypothalamus Present 3C
TS22: midbrain Present 3C
TS22: spinal cord Present 3C
TS22: tectum Present 3C
TS22: cerebellum Absent 3C
TS22: cortical plate Absent 3C

Specimen 3D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: amygdala Present 3D
TS22: brainstem Present 3D
TS22: hypothalamus Present 3D
TS22: midbrain Present 3D
TS22: spinal cord Present 3D
TS22: tectum Present 3D
TS22: cerebellum Absent 3D
TS22: cortical plate Absent 3D

Specimen 3E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: amygdala Present 3E
TS24: brainstem Present 3E
TS24: hypothalamus Present 3E
TS24: midbrain Present 3E
TS24: spinal cord Present 3E
TS24: tectum Present 3E
TS24: cerebellum Absent 3E
TS24: cortical plate Absent 3E

Specimen 3F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: amygdala Present 3F
TS24: brainstem Present 3F
TS24: hypothalamus Present 3F
TS24: midbrain Present 3F
TS24: spinal cord Present 3F
TS24: tectum Present 3F
TS24: olfactory lobe Present Regionally restricted 3F Expression is in the accessory olfactory bulb.
TS24: thalamus Present Regionally restricted 3F Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS24: cerebellum Absent 3F
TS24: cortical plate Absent 3F

Specimen 3G: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: amygdala Present 3G
TS26: brainstem Present 3G
TS26: hypothalamus Present 3G
TS26: midbrain Present 3G
TS26: spinal cord Present 3G
TS26: thalamus Present Regionally restricted 3G Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS26: cerebellum Absent 3G
TS26: cortical plate Absent 3G

Specimen 3H: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: amygdala Present 3H
TS26: brainstem Present 3H
TS26: hypothalamus Present 3H
TS26: midbrain Present 3H
TS26: spinal cord Present 3H
TS26: tectum Present 3H
TS26: thalamus Present Regionally restricted 3H Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS26: cerebellum Absent 3H
TS26: cortical plate Absent 3H

Specimen 4A: postnatal day 0.5 (more )
Structure Level Pattern Image Note
TS27: amygdala Strong 4A
TS27: hypothalamus Strong 4A
TS27: brainstem Present 4A
TS27: inferior colliculus Present 4A
TS27: superior colliculus Present 4A
TS27: accessory olfactory bulb Present Regionally restricted 4A Expression is in a single group of cells.
TS27: thalamus Present Regionally restricted 4A Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS27: entorhinal cortex Weak 4A
TS27: perirhinal cortex Weak 4A
TS27: piriform cortex Weak 4A

Specimen 4B: postnatal day 0.5 (more )
Structure Level Pattern Image Note
TS27: amygdala Strong 4B
TS27: hypothalamus Strong 4B
TS27: brainstem Present 4B
TS27: inferior colliculus Present 4B
TS27: superior colliculus Present 4B
TS27: tectum Present 4B
TS27: thalamus Present Regionally restricted 4B Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS27: entorhinal cortex Weak 4B
TS27: perirhinal cortex Weak 4B
TS27: piriform cortex Weak 4B

Specimen 4C: postnatal day 1.5 (more )
Structure Level Pattern Image Note
TS27: amygdala Strong 4C
TS27: hypothalamus Strong 4C
TS27: brainstem Present 4C
TS27: inferior colliculus Present 4C
TS27: superior colliculus Present 4C
TS27: thalamus Present Regionally restricted 4C Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS27: entorhinal cortex Weak 4C
TS27: perirhinal cortex Weak 4C
TS27: piriform cortex Weak 4C

Specimen 4D: postnatal day 1.5 (more )
Structure Level Pattern Image Note
TS27: amygdala Strong 4D
TS27: hypothalamus Strong 4D
TS27: accessory olfactory bulb Present 4D
TS27: brainstem Present 4D
TS27: inferior colliculus Present 4D
TS27: superior colliculus Present 4D
TS27: thalamus Present Regionally restricted 4D Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS27: entorhinal cortex Weak 4D
TS27: perirhinal cortex Weak 4D
TS27: piriform cortex Weak 4D

Specimen 4E: postnatal day 3.5 (more )
Structure Level Pattern Image Note
TS27: amygdala Strong 4E
TS27: hypothalamus Strong 4E
TS27: brainstem Present 4E
TS27: inferior colliculus Present 4E
TS27: superior colliculus Present 4E
TS27: dentate gyrus Present Regionally restricted 4E Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS27: hippocampus Present Regionally restricted 4E Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS27: thalamus Present Regionally restricted 4E Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS27: entorhinal cortex Weak 4E
TS27: perirhinal cortex Weak 4E
TS27: piriform cortex Weak 4E

Specimen 4F: postnatal day 3.5 (more )
Structure Level Pattern Image Note
TS27: amygdala Strong 4F
TS27: hypothalamus Strong 4F
TS27: accessory olfactory bulb Present 4F
TS27: brainstem Present 4F
TS27: inferior colliculus Present 4F
TS27: superior colliculus Present 4F
TS27: tectum Present 4F
TS27: thalamus Present Regionally restricted 4F Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS27: entorhinal cortex Weak 4F
TS27: perirhinal cortex Weak 4F
TS27: piriform cortex Weak 4F

Specimen 4G: postnatal day 7.5 (more )
Structure Level Pattern Image Note
TS28: amygdala Strong 4G
TS28: hypothalamus Strong 4G
TS28: brainstem Present 4G
TS28: inferior colliculus Present 4G
TS28: superior colliculus Present 4G
TS28: dentate gyrus Present Regionally restricted 4G Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS28: hippocampus Present Regionally restricted 4G Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS28: thalamus Present Regionally restricted 4G Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS28: entorhinal cortex Weak 4G
TS28: perirhinal cortex Weak 4G
TS28: piriform cortex Weak 4G

Specimen 4H: postnatal day 7.5 (more )
Structure Level Pattern Image Note
TS28: amygdala Strong 4H
TS28: hypothalamus Strong 4H
TS28: accessory olfactory bulb Present 4H
TS28: brainstem Present 4H
TS28: inferior colliculus Present 4H
TS28: superior colliculus Present 4H
TS28: thalamus Present Regionally restricted 4H Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS28: entorhinal cortex Weak 4H
TS28: perirhinal cortex Weak 4H
TS28: piriform cortex Weak 4H

Specimen 4I: postnatal day 21.5 (more )
Structure Level Pattern Image Note
TS28: amygdala Present 4I
TS28: brainstem Present 4I
TS28: hypothalamus Present 4I
TS28: inferior colliculus Present 4I
TS28: superior colliculus Present 4I
TS28: dentate gyrus Present Regionally restricted 4I Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS28: hippocampus Present Regionally restricted 4I Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS28: fimbria hippocampus Moderate 4I
TS28: subiculum Moderate 4I
TS28: entorhinal cortex Weak 4I
TS28: perirhinal cortex Weak 4I
TS28: piriform cortex Weak 4I
TS28: hippocampus region Weak Regionally restricted 4I Expression is in the ventral hippocampus.

Specimen 4J: postnatal day 21.5 (more )
Structure Level Pattern Image Note
TS28: accessory olfactory bulb granule cell layer Present 4J
TS28: accessory olfactory bulb mitral cell layer Present 4J
TS28: amygdala Present 4J
TS28: brainstem Present 4J
TS28: hypothalamus Present 4J
TS28: inferior colliculus Present 4J
TS28: superior colliculus Present 4J
TS28: dentate gyrus Present Regionally restricted 4J Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS28: hippocampus Present Regionally restricted 4J Expression is in the ventral hippocampus and is weak in the dorsal hippocampus.
TS28: thalamus Present Regionally restricted 4J Expression is mainly around the exterior borders of the thalamus, including the lateral and medial geniculate nuclei.
TS28: entorhinal cortex Weak 4J
TS28: perirhinal cortex Weak 4J
TS28: piriform cortex Weak 4J

Specimen 5A: postnatal day 0.5 (more )
Structure Level Pattern Image Note
TS27: deep cerebellar nucleus Present 5A Expression is in the dentate nucleus of the cerebellum.

Specimen 5B: postnatal day 21.5 (more )
Structure Level Pattern Image Note
TS28: inferior olivary nucleus Present 5B
TS28: gigantocellular reticular nucleus Moderate 5B
TS28: lateral reticular nucleus Moderate 5B

Specimen 5C: postnatal day 0.5 (more )
Structure Level Pattern Image Note
TS27: gigantocellular reticular nucleus Moderate 5C
TS27: lateral reticular nucleus Moderate 5C
TS27: solitary tract nucleus Moderate 5C

Specimen 5D: postnatal day 0.5 (more )
Structure Level Pattern Image Note
TS27: trigeminal V spinal sensory nucleus Present Regionally restricted 5D Expression is in the spinal trigeminal nucleus at the outer margins, forming a distinct band around the nucleus and is absent in the center.

Specimen 9A: postnatal (more )
Structure Level Pattern Image Note
TS28: hypothalamus Present 9A Expression localizes to the stigmoid body within cells.

Specimen 9B: postnatal (more )
Structure Level Pattern Image Note
TS28: hypothalamus Present 9B

Specimen not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon Present Regionally restricted Expression is in the amygdala.
TS17: diencephalon Present Regionally restricted Expression is in the hypothalamus.

Specimen Table 1: postnatal adult (more )
Structure Level Pattern Image Note
TS28: arcuate nucleus Strong
TS28: bed nucleus of stria terminalis Strong
TS28: central amygdaloid nucleus Strong
TS28: dorsal lateral geniculate nucleus Strong
TS28: dorsomedial hypothalamic nucleus Strong
TS28: intercalated amygdaloid nucleus Strong
TS28: lateral septal nucleus Strong
TS28: medial amygdaloid nucleus Strong
TS28: medial geniculate nucleus Strong
TS28: medial septal nucleus Strong
TS28: parafascicular nucleus Strong
TS28: paraventricular thalamic nucleus Strong
TS28: supraoptic nucleus Strong
TS28: ventral lateral geniculate nucleus Strong
TS28: ventromedial hypothalamic nucleus Strong
TS28: dentate gyrus Strong Regionally restricted Strong in the ventral hippocampus, weak in the dorsal part.
TS28: thalamus Strong Regionally restricted Strong dorsal, moderate anterior and posterior, and weak lateral. Expression is also in the following nuclei: ehtmoid, posterior intralaminar, posterior triangular, and stria medullaris.
TS28: accessory olfactory bulb Moderate
TS28: basomedial amygdaloid nucleus Moderate
TS28: cortical amygdaloid nucleus Moderate
TS28: fimbria hippocampus Moderate
TS28: intralaminar thalamic group Moderate
TS28: medial preoptic nucleus Moderate
TS28: pallidum Moderate
TS28: paraventricular hypothalamic nucleus Moderate
TS28: subiculum Moderate
TS28: zona incerta Moderate
TS28: hypothalamus Present Regionally restricted Expression is in the ventral premammillary-, lateroanterior-, dorsal-, stigmoid-, septohypothalamic-, striohypothalamic-, tuberal-, terete-, parasubthalamic nuclei and in the medial forebrain bundle.
TS28: amygdala Present Regionally restricted Expression is in a variety of nuclei.
TS28: accumbens nucleus Weak
TS28: amygdalohippocampal area Weak
TS28: amygdalopiriform transition area Weak
TS28: caudate-putamen Weak
TS28: entorhinal cortex Weak
TS28: lateral amygdaloid nucleus Weak
TS28: lateral habenular nucleus Weak
TS28: perirhinal cortex Weak
TS28: piriform cortex Weak
TS28: reticular thalamic nucleus Weak
TS28: subthalamic nucleus Weak
TS28: hippocampus CA1 Weak Regionally restricted Expression is in the ventral region.
TS28: hippocampus CA3 Weak Regionally restricted Expression is in the ventral region.
TS28: basolateral amygdaloid nucleus Absent
TS28: main olfactory bulb Absent

Specimen Table 2: postnatal adult (more )
Structure Level Pattern Image Note
TS28: inferior colliculus Strong
TS28: parabrachial nucleus Strong
TS28: superior colliculus Strong
TS28: trigeminal V spinal sensory nucleus Strong
TS28: periaqueductal grey Moderate
TS28: solitary tract nucleus Moderate
TS28: cerebellum Present Regionally restricted Expression is in a variety of nuclei.
TS28: medulla oblongata Present Regionally restricted Expression is in a variety of nuclei.
TS28: midbrain Present Regionally restricted Expression is in a variety of nuclei.
TS28: pons Present Regionally restricted Expression is in a variety of nuclei.
TS28: deep cerebellar nucleus Weak
TS28: inferior olivary nucleus Weak
TS28: locus coeruleus Weak
TS28: median raphe nucleus Weak
TS28: ventral tegmental area Weak
TS28: cerebellar hemisphere Absent
TS28: cerebellum vermis Absent


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/14/2024
MGI 6.23
The Jackson Laboratory