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Gene Expression Data
Assay Details
Assay
Reference: J:84279 Lian JB, et al., Runx1/AML1 hematopoietic transcription factor contributes to skeletal development in vivo. J Cell Physiol. 2003 Aug;196(2):301-11
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:5514174
Gene symbol: Runx1
Gene name: runt related transcription factor 1
Reporter: lacZ
Direct Detection
Assay notes: Whole embryos, newborn mice, and bone tissues from post-natal mice were fixed in 2% paraformaldehyde, 0.2% glutaraldehyde. Soft tissues from adult mice were fixed in 1% formalin.
Results
Specimen 2A,B,C: postnatal newborn; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS27: chondrocranium Present Regionally restricted 2a Expression is in the calvarial suture tissues separating the frontal and parietal bone areas.
TS27: hair follicle Present 2a
TS27: jaw Present 2a
TS27: long bone epiphysis Present 2a
TS27: scapula Present 2a
TS27: vibrissa Present 2a
TS27: vertebra Present 2b , 2a
TS27: vertebral column Present 2b , 2a
TS27: rib Strong 2b , 2c , 2a

Specimen 2D: postnatal newborn; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS27: thymus Strong 2d
TS27: appendicular skeleton Present 2d
TS27: axial skeleton Present 2d
TS27: lung Present 2d
TS27: mandible Present 2d
TS27: premaxilla Present 2d
TS27: trachea Present 2d
TS27: nose Present Regionally restricted 2d Expression is in the soft tissues of the nasal area.
TS27: brain Present Regionally restricted 2d
TS27: heart Absent 2d

Specimen 2E: postnatal newborn; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS27: bone marrow Strong 2e
TS27: skin Strong 2e
TS27: perichondrium Strong Regionally restricted 2e Expression is in the perichondrium surrounding the digits and bone.
TS27: cartilage Absent 2e Absent in mature cartilage.

Specimen not shown: postnatal newborn; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS27: thyroid gland Present

Specimen 3a: embryonic day 12.5; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS20: rib pre-cartilage condensation Present Regionally restricted 3a Expression coincides with chondroprogenitors forming the cartilage anlagen of the axial and appendicular skeleton and it declined in regions of tissues undergoing endochondral bone formation.

Specimen 3c: embryonic day 14.5; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS22: dorsal root ganglion Very strong 3c
TS22: vertebral pre-cartilage condensation Present Regionally restricted 3c Expression coincides with chondroprogenitors forming the cartilage anlagen of the axial and appendicular skeleton and it declined in regions of tissues undergoing endochondral bone formation.

Specimen 3e: embryonic day 16.5; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS24: rib Present Regionally restricted 3e Expression coincides with chondroprogenitors forming the cartilage anlagen of the axial and appendicular skeleton and it declined in regions of tissues undergoing endochondral bone formation.

Specimen 3g: embryonic day 16.5; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS24: vertebra Present Regionally restricted 3g Expression is in the perichondrium or periosteum of the maturing vertebral bodies.
TS24: vertebral cartilage condensation Absent 3g Absent in hyaline cartilage.

Specimen 4a: postnatal day 7; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: rib Present 4a
TS28: periosteum Present 4f , 4a
TS28: perichondrium Present 4a , 4d Expression is in differentiating chondroblasts from the perichondrium and in chondrocytes in lacunae in resting cartilage, absent in chondrocytes in the proliferating zone.
TS28: endochondral bone Present Regionally restricted 4a , 4f , 4d Expression is in chondroprogenitors cells and early stage differentiating chondrocytes, absent in chondrocytes in the proliferating zone.
TS28: bone marrow Present 4a
TS28: hypertrophic cartilage zone Absent 4e , 4f

Specimen 4b: postnatal day 7; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: perichondrium Present 4b Expression is in differentiating chondroblasts from the perichondrium.

Specimen 4g: postnatal newborn; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS27: bone marrow Present 4g
TS27: rib Present 4g
TS27: hypertrophic cartilage zone Absent 4g

Specimen 4i: postnatal newborn; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS27: perichondrium Present 4i Expression is present in chondrocytes.
TS27: rib Present 4i Expression is present in chondrocytes.

Specimen 5a: postnatal; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: bone marrow Present 5a
TS28: periosteum Present 5a
TS28: bone Present Regionally restricted 5a Expression is in early stage osteoblasts.

Specimen 5b: postnatal; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: bone marrow Present 5b
TS28: bone Present Regionally restricted 5b Expression is present in osteoblasts but not osteocytes.

Specimen 5c: postnatal; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: bone Present Regionally restricted 5c Expression is in osteoblasts on the endosteal side of the diaphysis and in some areas within the cortical bone. It is not present in osteocytes.

Specimen 6a: postnatal week 6; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: chondrocranium Present Regionally restricted 6a Expression is in suture lines of calvaria.

Specimen 6b: postnatal week 6; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: bone marrow Present Regionally restricted 6b Expression is in the marrow and periosteum of all bones (shown rib).
TS28: periosteum Present Regionally restricted 6b Expression is in the marrow and periosteum of all bones (shown rib).
TS28: rib Present Regionally restricted 6b Expression is in the marrow and periosteum of all bones (shown rib).
TS28: sternum Present Regionally restricted 6b Expression is in xiphoid cartilage.

Specimen 6c: postnatal week 6; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: bone marrow Present Regionally restricted 6c Expression is in the marrow and periosteum of all bones (shown tail vertebrae).
TS28: periosteum Present Regionally restricted 6c Expression is in the marrow and periosteum of all bones (shown tail vertebrae).
TS28: vertebra Present Regionally restricted 6c Expression is in the marrow and periosteum of all bones (shown tail vertebrae).

Specimen 6d: postnatal week 6; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: bone marrow Present 6d
TS28: limb long bone Present 6d

Specimen 6e: postnatal month 7; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: periosteum Present 6e

Specimen 6g: postnatal month 7; Runx1tm2Spe/Runx1+ (more )
Structure Level Pattern Image Note
TS28: trachea cartilage Present 6g

Specimen 6h: postnatal month 7; Runx1tm2Spe/Runx1+ (more )
Note: Plastic embedded.
Structure Level Pattern Image Note
TS28: trachea cartilage Present 6h
TS28: trachea epithelium Present 6h

Specimen 6i: postnatal month 7; Runx1tm2Spe/Runx1+ (more )
Note: Plastic embedded.
Structure Level Pattern Image Note
TS28: bronchus epithelium Present 6i

Specimen 6j: postnatal month 7; Runx1tm2Spe/Runx1+ (more )
Note: Plastic embedded.
Structure Level Pattern Image Note
TS28: respiratory bronchiole epithelium Present 6j
TS28: alveolar duct Absent 6j


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory