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Gene Expression Data
Assay Details
Assay
Reference: J:29420 Wijnholds J, et al., Segment-specific expression of the neuronatin gene during early hindbrain development. Dev Biol. 1995 Sep;171(1):73-84
Assay type: RNA in situ
MGI Accession ID: MGI:5508765
Gene symbol: Nnat
Gene name: neuronatin
Probe: Neuronatin cDNA1
Probe preparation: Antisense labelled with S35 RNA
Results
Specimen 5A: embryonic day 9.75 (more )
Structure Level Pattern Image Note
TS16: future hindbrain ventricular layer Strong Regionally restricted 5A Expression is in the ventral ventricular zone.
TS16: branchial arch mesenchyme derived from neural crest Strong 5A
TS16: diencephalon lamina terminalis Present 5A
TS16: head mesenchyme derived from neural crest Present 5A
TS16: neural tube lateral wall Present Regionally restricted 5A Expression is in the ventral part of the undifferentiated ventricular zone.
TS16: surface ectoderm Present Regionally restricted 5A Expression is in the ventral midline surface ectoderm.
TS16: future midbrain Absent 5A

Specimen 5B: embryonic day 9.75 (more )
Structure Level Pattern Image Note
TS16: branchial arch mesenchyme derived from neural crest Strong 5B
TS16: Rathke's pouch Present 5B
TS16: diencephalon lamina terminalis Present 5B
TS16: head mesenchyme derived from neural crest Present 5B
TS16: surface ectoderm Present Regionally restricted 5B Expression is in the ventral midline surface ectoderm.
TS16: mesenchyme derived from splanchnopleure Present Regionally restricted 5B Expression is in splanchnic mesoderm of the hindgut.
TS16: future midbrain Absent 5B

Specimen 5C: embryonic day 9.75 (more )
Structure Level Pattern Image Note
TS16: Rathke's pouch Present Regionally restricted 5C Expression is in the intermediate zone.
TS16: future hindbrain Present Regionally restricted 5C Expression is in the intermediate zone.
TS16: diencephalon lamina terminalis Present 5C
TS16: facio-acoustic ganglion complex Present 5C
TS16: trigeminal ganglion Present 5C
TS16: future midbrain Absent 5C

Specimen 5D: embryonic day 9.75 (more )
Structure Level Pattern Image Note
TS16: branchial arch mesenchyme derived from neural crest Strong 5D
TS16: diencephalon lamina terminalis Present 5D
TS16: facio-acoustic ganglion complex Present 5D
TS16: trigeminal ganglion Present 5D
TS16: future hindbrain Present Regionally restricted 5D Expression is in the intermediate zone.
TS16: future midbrain Absent 5D

Specimen 5E: embryonic day 9.75 (more )
Structure Level Pattern Image Note
TS16: paraxial mesenchyme Present 5E
TS16: somite Present 5E

Specimen 6A/B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: rhombomere ventricular layer Strong Regionally restricted 6A/B Expression is in the ventral ventricular zone.
TS17: hindbrain lateral wall Present Regionally restricted 6A/B Expression is in the intermediate zone.
TS17: diencephalon Present Regionally restricted 6A/B Expression is ventral.
TS17: eye Present Regionally restricted 6A/B Expression is in the optic chiasma.
TS17: telencephalon Present Regionally restricted 6A/B Expression is in the intermediate zone.

Specimen 6C/D: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: rhombomere ventricular layer Strong Regionally restricted 6C/D Expression is in the ventral ventricular zone.
TS17: hindbrain lateral wall Present Regionally restricted 6C/D Expression is in the intermediate zone.
TS17: diencephalon Present Regionally restricted 6C/D Expression is ventral.
TS17: eye Present Regionally restricted 6C/D Expression is in the optic chiasma and the preoccular muscle mass.
TS17: telencephalon Present Regionally restricted 6C/D Expression is in the intermediate zone.
TS17: Rathke's pouch Present 6C/D

Specimen 6E/F: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: rhombomere ventricular layer Strong Regionally restricted 6E/F Expression is in the ventral ventricular zone.
TS17: hindbrain lateral wall Present Regionally restricted 6E/F Expression is in the intermediate zone.

Specimen 7A/D: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: medulla oblongata Strong 7A/D
TS21: metencephalon Strong 7A/D
TS21: choroid plexus Absent 7A/D

Specimen 7B/E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: medulla oblongata Strong 7B/E
TS21: metencephalon Strong 7B/E
TS21: facial ganglion Present 7B/E
TS21: pinna mesenchyme Present 7B/E
TS21: remnant of Rathke's pouch Present 7B/E
TS21: trigeminal ganglion Present 7B/E
TS21: vestibulo-cochlear ganglion Present 7B/E
TS21: retina Present Regionally restricted 7B/E Expression is in the inner neural layer.
TS21: choroid plexus Absent 7B/E

Specimen 7C/F: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: facial ganglion Present 7C/F
TS21: pinna mesenchyme Present 7C/F
TS21: trigeminal ganglion Present 7C/F
TS21: vestibulo-cochlear ganglion Present 7C/F
TS21: retina Present Regionally restricted 7C/F Expression is in the inner neural layer.
TS21: cochlear duct mesenchyme Present Regionally restricted 7C/F Expression is in the mesenchyme surrunding the neural epithelium in the cochlea.
TS21: spinal cord Very strong 7C/F Expression is in the intermediate zone.
TS21: choroid plexus Absent 7C/F

Specimen 7G/I: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord Very strong 7G/I Expression is in the intermediate zone.
TS23: medulla oblongata Strong 7G/I
TS23: metencephalon Strong 7G/I
TS23: dorsal root ganglion Present 7G/I
TS23: peripheral nerve trunk Present 7G/I
TS23: choroid plexus Absent 7G/I

Specimen 7H/J: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata Strong 7H/J
TS23: metencephalon Strong 7H/J
TS23: dorsal root ganglion Present 7H/J
TS23: choroid plexus Absent 7H/J

Specimen 7K/L: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cochlea epithelium Present 7K/L
TS23: dorsal root ganglion Present 7K/L
TS23: facial ganglion Present 7K/L
TS23: limb mesenchyme Present 7K/L
TS23: mandible Present 7K/L
TS23: maxilla Present 7K/L
TS23: tongue mesenchyme Present 7K/L
TS23: trigeminal ganglion Present 7K/L
TS23: vestibulo-cochlear ganglion Present 7K/L
TS23: cochlear duct mesenchyme Present Regionally restricted 7K/L Expression is in the mesenchyme surrunding the neural epithelium in the cochlea.

Specimen not shown E9.75: embryonic day 9.75 (more )
Structure Level Pattern Image Note
TS16: foregut Absent

Specimen not shown E10.5: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: otocyst Present Regionally restricted Expression is in the lateral epithelium of the otic vesicle.
TS17: acoustic ganglion Present
TS17: facial ganglion Present
TS17: glossopharyngeal ganglion Present
TS17: trigeminal ganglion Present
TS17: vagus ganglion Present

Specimen not shown E13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: peripheral nerve trunk Present

Specimen not shown E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: remnant of Rathke's pouch Present

Specimen not shown E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: medulla oblongata Strong
TS25: metencephalon Strong
TS25: remnant of Rathke's pouch Present
TS25: retina inner nuclear layer Present


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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory