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Gene Expression Data
Assay Details
Assay
Reference: J:39345 Inoue T, et al., Cadherin-6 expression transiently delineates specific rhombomeres, other neural tube subdivisions, and neural crest subpopulations in mouse embryos. Dev Biol. 1997 Mar 15;183(2):183-94
Assay type: RNA in situ
MGI Accession ID: MGI:5490617
Gene symbol: Cdh6
Gene name: cadherin 6
Probe: Cad6 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 2A: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo Present Regionally restricted 2A Expression is in an anterior crescent area.

Specimen 2B: embryonic day 7.75 (more )
Structure Level Pattern Image Note
TS12: future hindbrain Present 2B

Specimen 2C: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: future midbrain Present Regionally restricted 2C Expression is at the boundary.
TS12: future prosencephalon Present Regionally restricted 2C Expression is at the boundary.
TS12: future hindbrain Present 2C
TS12: future midbrain neural crest Present 2C

Specimen 2D: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: future midbrain Present Regionally restricted 2D Expression is at the boundary.
TS12: future prosencephalon Present Regionally restricted 2D Expression is at the boundary.
TS12: future hindbrain Present 2D
TS12: future midbrain neural crest Present 2D
TS12: future spinal cord Present Regionally restricted 2D Expression is at the caudal end.

Specimen 2E: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: future midbrain Present Regionally restricted 2E Expression is at the ridge of the neural fold.
TS12: future hindbrain Present Regionally restricted 2E Expression is at the ridge of the neural fold of the anterior hindbrain.

Specimen 2F: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: future hindbrain Present 2F

Specimen 2G: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain neural crest Present 2G
TS13: future hindbrain Present Regionally restricted 2G Expression is in a band-like pattern.

Specimen 2H: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain neural crest Present 2H

Specimen 2I: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain neural crest Present 2I
TS13: future hindbrain Present Regionally restricted 2I Expression is in a band-like pattern.

Specimen 2J: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain neural crest Present 2J

Specimen 3A: embryonic day 8.0 (more )
Note: Double labeled: blue - Cdh6; red - Egr2 (assay MGI:5490628).
Structure Level Pattern Image Note
TS12: future hindbrain Present Regionally restricted 3A The anterior limit of expression is the rhombomere 4/5 boundary and is virtually negative in rhombomere 3 and 5.

Specimen 3B: embryonic day 8.5 (more )
Note: Double labeled: blue - Cdh6; red - Egr2 (assay MGI:5490628).
Structure Level Pattern Image Note
TS13: future hindbrain posterior to rhombomere 5 Present Regionally restricted 3B Rhombomere 6.
TS13: future hindbrain Trace Regionally restricted 3B Virtually negative in rhombomere 3 and 5.

Specimen 4A: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: 1st branchial arch mandibular component mesenchyme derived from neural crest Present 4A
TS14: rhombomere 6 Present 4A

Specimen 4B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component mesenchyme derived from neural crest Present 4B
TS15: cranial preganglion Present 4B
TS15: optic stalk Present 4B
TS15: rhombomere 6 Present 4B
TS15: trigeminal preganglion Present 4B
TS15: trunk mesenchyme derived from neural crest Present 4B
TS15: future hindbrain Present Regionally restricted 4B Expression is at the anterior border of the dorsal hindbrain.
TS15: future midbrain Present Regionally restricted 4B Expression is in a dorsal portion.
TS15: diencephalon Present Regionally restricted 4B
TS15: future forebrain Present Regionally restricted 4B
TS15: eye Present Regionally restricted 4B Future neural retina.

Specimen 4C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future hindbrain Present Regionally restricted 4C Expression is at the anterior border of the dorsal hindbrain.
TS15: 1st branchial arch mandibular component mesenchyme derived from neural crest Present 4C
TS15: trigeminal preganglion Present 4C

Specimen 4D: embryonic day 12.5 (more )
Note: Dissected brain, the cerebral hemisphere was removed in this sample.
Structure Level Pattern Image Note
TS20: hypothalamus ventricular layer Present 4D
TS20: diencephalon ventricular layer Weak Regionally restricted 4D As a line at the zona limitans intrathalamica along the boundary between the dorsal and ventral thalamus and along the alar/basal boundary in the diencephalon and midbrain.
TS20: midbrain ventricular layer Weak Regionally restricted 4D As a line at the zona limitans intrathalamica along the boundary between the dorsal and ventral thalamus and along the alar/basal boundary in the diencephalon and midbrain.
TS20: thalamus ventricular layer Weak Regionally restricted 4D As a line at the zona limitans intrathalamica along the boundary between the dorsal and ventral thalamus and along the alar/basal boundary in the diencephalon and midbrain.

Specimen 4E: embryonic day 12.5 (more )
Note: Isolated telencephalon.
Structure Level Pattern Image Note
TS20: ganglionic eminence Present Regionally restricted 4E Expression is in a dorsal portion.

Specimen 5A: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: nerve Present 5A
TS20: spinal cord floor plate Present 5A
TS20: spinal cord roof plate Present 5A
TS20: sympathetic ganglion Present Regionally restricted 5A Expression is in the peripheral zone of the sympathetic ganglia.
TS20: basal columns Present Regionally restricted 5A Expression is in a portion.
TS20: tail mesenchyme derived from neural crest Present Regionally restricted 5A Expression is in neural crest-derived cells around the trachea, artery, and esophagus.

Specimen 5B, C: embryonic day 12.0 (more )
Note: Double labeled: blue - Cdh6; brown - Nefm (assay MGI:5490637).
Structure Level Pattern Image Note
TS20: basal columns Present Regionally restricted 5B
TS20: spinal cord floor plate Present Regionally restricted 5B
TS20: spinal cord roof plate Present Regionally restricted 5B
TS20: nerve Present 5B , 5C
TS20: dorsal root ganglion Absent 5B

Specimen 5E: embryonic day 12.0; Pax3Sp-2H/Pax3+ (more )
Structure Level Pattern Image Note
TS20: hindlimb Present 5E
TS20: spinal cord floor plate Present 5E
TS20: spinal cord roof plate Present 5E
TS20: basal columns Present Regionally restricted 5E

Specimen 5F: embryonic day 12.0; Pax3Sp-2H/Pax3Sp-2H (more )
Structure Level Pattern Image Note
TS20: spinal cord Present Regionally restricted 5F Expression is at the edges of the open neural plate.
TS20: hindlimb Absent 5F

Specimen 5G: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: nerve Present 5G
TS20: hindlimb interdigital region Present Regionally restricted 5G Expression is beneath the epidermis in a nerve-like network.

Specimen 5H: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: peripheral nerve Absent 5H

Specimen not shown: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: eye Present Regionally restricted Future iris.
TS20: optic stalk Present

Specimen 6B +/-: embryonic day 8.0; Hoxa1tm1Mrc/Hoxa1+ (more )
Note: 4 somites.
Structure Level Pattern Image Note
TS12: future hindbrain Present Regionally restricted 6B +/-

Specimen 6B -/-: embryonic day 8.0; Hoxa1tm1Mrc/Hoxa1tm1Mrc (more )
Note: 4 somites.
Structure Level Pattern Image Note
TS12: future hindbrain Present Regionally restricted 6B -/- The anterior limit of expression has retreated compared to wild-type.

Specimen 6C: embryonic day 8.5; Hoxa1tm1Mrc/Hoxa1+ (more )
Note: 9 somites.
Structure Level Pattern Image Note
TS13: rhombomere 4 Present 6C
TS13: future hindbrain posterior to rhombomere 5 Present Regionally restricted 6C Rhombomere 6.

Specimen 6D: embryonic day 8.5; Hoxa1tm1Mrc/Hoxa1tm1Mrc (more )
Note: 9 somites.
Structure Level Pattern Image Note
TS13: rhombomere 4 Weak 6D
TS13: future hindbrain posterior to rhombomere 5 Weak Regionally restricted 6D Rhombomere 6.

Specimen 6E: embryonic day 8.5; Hoxa1tm1Mrc/Hoxa1+ (more )
Note: 9 somites.
Structure Level Pattern Image Note
TS13: rhombomere 2 Present 6E
TS13: rhombomere 4 Present 6E
TS13: future hindbrain posterior to rhombomere 5 Present Regionally restricted 6E Rhombomere 6.

Specimen 6F: embryonic day 8.5; Hoxa1tm1Mrc/Hoxa1tm1Mrc (more )
Note: 9 somites.
Structure Level Pattern Image Note
TS13: rhombomere 4 Weak 6F
TS13: future hindbrain posterior to rhombomere 5 Weak Regionally restricted 6F Rhombomere 6.
TS13: rhombomere 2 Present 6F Expression extends more caudally in this mutant.

Specimen 6G: embryonic day 8.5; Hoxa1tm1Mrc/Hoxa1+ (more )
Note: 11 somites.
Structure Level Pattern Image Note
TS13: rhombomere 4 Present Regionally restricted 6G At the neural fold ridge.
TS13: future hindbrain posterior to rhombomere 5 Present Regionally restricted 6G Rhombomere 6 at the neural fold ridge.
TS13: rhombomere 2 Present 6G

Specimen 6H: embryonic day 8.5; Hoxa1tm1Mrc/Hoxa1tm1Mrc (more )
Note: 11 somites.
Structure Level Pattern Image Note
TS13: future hindbrain posterior to rhombomere 5 Present 6H Expression was basically normal in this mutant.
TS13: rhombomere 4 Present 6H Expression was basically normal in this mutant.
TS13: rhombomere 2 Present 6H Expression extends more caudally in this mutant.

Specimen 6I: embryonic day 9.5; Hoxa1tm1Mrc/Hoxa1+ (more )
Structure Level Pattern Image Note
TS15: cranial preganglion Present 6I
TS15: rhombomere 4 Present 6I
TS15: rhombomere 6 Present 6I

Specimen 6J: embryonic day 9.5; Hoxa1tm1Mrc/Hoxa1tm1Mrc (more )
Structure Level Pattern Image Note
TS15: cranial preganglion Present 6J Expression is similar to wild-type.
TS15: rhombomere 4 Present 6J Expression is similar to wild-type.
TS15: rhombomere 6 Present 6J Expression is similar to wild-type.


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last database update
05/14/2024
MGI 6.23
The Jackson Laboratory