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Gene Expression Data
Assay Details
Assay
Reference: J:147291 Piirsoo M, et al., Expression analysis of the CLCA gene family in mouse and human with emphasis on the nervous system. BMC Dev Biol. 2009;9:10
Assay type: RNA in situ
MGI Accession ID: MGI:5471301
Gene symbol: Clca3a1
Gene name: chloride channel accessory 3A1
Probe: mclca1/2 probe
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Assay notes: Probe recognizes both Clca1 and Clca2. However, authors assert that most of the signal likely corresponds to Clca1 expression. Only Clca1 has been annotated to.
Results
Specimen 2A: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb Strong Regionally restricted 2A Very low level of expression in hypothalamic nuclei.
TS28: cortical layer II Present 2A
TS28: cortical layer III Present 2A

Specimen 2B: postnatal adult (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb olfactory nerve layer Present 2B

Specimen 2D/G: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb olfactory nerve layer Strong Regionally restricted 2D/G Broad expression with highest levels in the olfactory nerve layer of the olfactory bulb.
TS28: cortical layer II Present 2D/G
TS28: cortical layer III Present 2D/G

Specimen 2E/H: postnatal adult (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb olfactory nerve layer Present 2E/H

Specimen 2P: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 2P
TS28: cortical layer III Present 2P

Specimen 2R: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb olfactory nerve layer Present 2R

Specimen 2S: postnatal adult (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb Present Regionally restricted 2S

Specimen not shown - P9: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: amygdalohippocampal area Weak
TS28: hippocampus CA3 Weak

Specimen not shown - adult: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hypothalamic nucleus Trace
TS28: cortical layer II Trace
TS28: cortical layer III Trace

Specimen 3A: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: dorsal aorta Strong 3A
TS21: heart Strong 3A
TS21: olfactory nerve Strong 3A

Specimen 3B/C: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: olfactory nerve Present 3B/C Expression in cells adjacent to the epithelium of the nasal cavity, most likely corresponding to the developing cranial nerve I (olfactory nerve).

Specimen 3D: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: olfactory nerve Present 3D Expression in cells adjacent to the epithelium of the nasal cavity, most likely corresponding to the developing cranial nerve I (olfactory nerve).

Specimen 3E/F: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: dorsal aorta Present 3E/F
TS21: spinal nerve Weak 3E/F

Specimen 3G: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: spinal nerve Weak 3G

Specimen 3H/J: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: dorsal aorta Present 3H/I

Specimen 3J: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: dorsal aorta Present 3J

Specimen 3K/L: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: heart Present 3K/L

Specimen 3M: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: heart Present 3M

Specimen 3N/O: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: midgut Strong 3N/O

Specimen 3P: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: midgut Strong 3P

Specimen 3R/S: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: urethra Strong 3R/S

Specimen 3T: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: urethra Strong 3T

Specimen 4A: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: diencephalon Present 4A
TS25: heart Present 4A
TS25: intestine Present 4A
TS25: liver Present 4A
TS25: lung Present 4A
TS25: optic nerve Present 4A
TS25: urethra Present 4A

Specimen 4B/C: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: diencephalon Present 4B/C Expression in the brain, predominantly in the diencephalon.

Specimen 4D/E: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: optic nerve Strong 4D/E Highest level of nervous system expression was in the optic nerve.

Specimen 4F/G: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: olfactory nerve Present 4F/G

Specimen 4H/I: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: trigeminal nerve Present 4H/I

Specimen 4J/K: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: skin Weak 4J/K

Specimen 4L/M: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: lung Present 4L/M
TS25: trachea Present 4L/M

Specimen 4N/O: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: aorta Present 4N/O
TS25: heart atrium Present 4N/O
TS25: lung Present 4N/O

Specimen 4P/R: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: heart Present 4P/R

Specimen 4S/T: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: liver Present 4S/T
TS25: vertebra Present 4S/T

Specimen 4U/V: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: intestine Present 4U/V

Specimen 4W/X: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: urethra Present 4W/X

Specimen 5A: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: diencephalon Present 5A

Specimen 5B: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: optic nerve Present 5B

Specimen 5C: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: olfactory nerve Present 5C

Specimen 5D: embryonic day 17.0 (more )
Structure Level Pattern Image Note
TS25: trigeminal nerve Present 5D


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory