Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:38461
Mucchielli ML, et al., Otlx2, an Otx-related homeobox gene expressed in the pituitary gland and in a restricted pattern in the forebrain. Mol Cell Neurosci. 1996;8(4):258-71
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Assay type:
|
RNA in situ
|
MGI Accession ID:
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MGI:5464894
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Gene symbol:
|
Pitx2
|
Gene name:
|
paired-like homeodomain transcription factor 2
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Probe:
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Otlx2 cDNA2
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Probe preparation:
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Antisense labelled with digoxigenin RNA
|
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Results
|
Specimen
not shown:
embryonic day 8.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 8.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS13: oral region |
Present |
Regionally restricted |
|
Expressed in the oral epithelium/ectoderm.
|
Specimen
2A:
embryonic day 9.5
(more )
Specimen
2A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
not shown:
embryonic day 9.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: forelimb bud mesenchyme |
Present |
Regionally restricted |
|
Expressed in the mesenchyme at the basis of the forelimb.
|
Specimen
2B:
embryonic day 10.5
(more )
Specimen
2B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
3A:
embryonic day 11.5
(more )
Specimen
3A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: forebrain |
Present |
Regionally restricted |
3A
|
Expression is restricted to the mammillary area (basal prosomere 4) and extends to the ventricular zone.
|
Specimen
3B:
embryonic day 11.5
(more )
Specimen
3B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: midbrain |
Present |
Graded |
3B
|
Expressed in a clear rostrocaudal gradient. Expressed in the basal plate of the anterior part in two layers.
|
TS19: forebrain |
Strong |
Regionally restricted |
3B
|
Expressed in the basal plate of the caudal prosencephalon (prosomere 1-4).
|
TS19: metencephalon basal plate |
Present |
Regionally restricted |
3B
|
Expressed in the first rhombomere.
|
Specimen
3C:
embryonic day 11.5
(more )
Specimen
3C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: metencephalon basal plate |
Present |
Regionally restricted |
3C
|
Expressed in the first rhombomere.
|
TS19: midbrain |
Present |
Regionally restricted |
3C
|
Expressed in the mesencephalic alar (future superior colliculus). Expression is strongest at the mesencephalic/prosomere1 boundary and declines caudally.
|
TS19: diencephalon |
Present |
Regionally restricted |
3C
|
Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.
|
Specimen
3D:
embryonic day 12.5
(more )
Specimen
3D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: midbrain |
Present |
Regionally restricted |
3D
|
Expressed in the superficial alar plate (future superior colliculus), and the subventricular basal plate. The two domains are discontinuous with each other.
|
TS20: metencephalon basal plate |
Present |
Regionally restricted |
3D
|
Expressed in the first rhombomere.
|
Specimen
4A:
embryonic day 12.5
(more )
Specimen
4A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Present |
|
4A
|
|
TS20: midbrain |
Present |
Regionally restricted |
4A
|
Expressed in the alar plate of the rostral region (future superior colliculus), and the basal plate. The two domains are discontinuous with each other.
|
TS20: metencephalon basal plate |
Present |
Regionally restricted |
4A
|
Expressed in the first rhombomere.
|
TS20: forebrain |
Present |
Regionally restricted |
4A
|
Homogeneously strong expression in the prosencephalon, with a sharp rostal limit at the prosomeric 4/5 boundary.
|
Specimen
4B:
embryonic day 12.5
(more )
Specimen
4B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section from whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: spinal cord lateral wall |
Present |
Regionally restricted |
4B
|
Expressed in the area dorsal to the motoneurons, but not in the ventricular layer where proliferating neuroblasts are found.
|
Specimen
not shown:
embryonic day 11.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
Not Specified
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: neural tube lateral wall |
Present |
Regionally restricted |
|
Expressed as a thin column along the entire length of the spinal cord, dorsal to the motor columns. No expression in the ventricular layer where proliferating neuroblasts are found.
|
Specimen
5A:
embryonic day 13.5
(more )
Specimen
5A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: midbrain |
Present |
Regionally restricted |
5A
|
Expression extends to the pretectal area. The caudal limit of the expression in the mesencephalic basal plate has retracted.
|
TS21: diencephalon |
Present |
Regionally restricted |
5A
|
A fainter and more diffuse expression in the alar plate of prosomere 1. Expressed in the entire mammillary area (basal prosomere 4). Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.
|
TS21: metencephalon basal plate |
Present |
Regionally restricted |
5A
|
Expressed in the first rhombomere.
|
Specimen
5B:
embryonic day 13.5
(more )
Specimen
5B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: midbrain |
Present |
Regionally restricted |
5B
|
The caudal limit of the expression in the mesencephalic basal plate has retracted.
|
TS21: diencephalon |
Present |
Regionally restricted |
5B
|
Expressed in the entire mammillary area (basal prosomere 4), including the ventral midline. Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.
|
Specimen
5C:
embryonic day 13.5
(more )
Specimen
5C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Present |
Regionally restricted |
5C
|
Expressed in the entire mammillary area (basal prosomere 4).
|
Specimen
5D:
embryonic day 13.5
(more )
Specimen
5D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Present |
Regionally restricted |
5D
|
Expressed in the entire mammillary area (basal prosomere 4), including the ventral midline. Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.
|
Specimen
6A:
embryonic day 16.5
(more )
Specimen
6A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
6A
|
Expressed in three patches underlining the prosomere 2/3, prosomere 3/4, and prosomere 4/5 boundaries.
|
Specimen
6B:
embryonic day 16.5
(more )
Specimen
6B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
6C:
embryonic day 16.5
(more )
Specimen
6C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
6D:
embryonic day 16.5
(more )
Specimen
6D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
6D
|
Expressed in the prerubral tegmentum, pretectum, superior colliculus, and mamillary region.
|
Specimen
8A:
postnatal newborn
(more )
Specimen
8A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal newborn
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: diencephalon |
Present |
Regionally restricted |
8A
|
Expressed along the zona limitans, probably corresponding to the intergeniculate leaflet and the deep part of the thalamic reticular nucleus.
|
TS27: subthalamic nucleus |
Present |
|
8A
|
|
TS27: zona incerta |
Present |
Regionally restricted |
8A
|
Expressed in the zona incerta pars dorsalis.
|
Specimen
8B:
postnatal newborn
(more )
Specimen
8B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal newborn
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
8C:
postnatal newborn
(more )
Specimen
8C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal newborn
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: diencephalon |
Present |
Regionally restricted |
8C
|
Expressed in the prerubral tegmentum.
|
Specimen
9A:
embryonic day 9.5
(more )
Specimen
9A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: Rathke's pouch |
Present |
|
9A
|
Expressed in the roof of the stomatodeum.
|
Specimen
9B:
embryonic day 10.5
(more )
Specimen
9B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: Rathke's pouch |
Present |
Regionally restricted |
9B
|
Expressed in a ring-like pattern.
|
Specimen
9C:
embryonic day 11.5
(more )
Specimen
9C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 11.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
9D:
embryonic day 13.5
(more )
Specimen
9D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
9E:
embryonic day 16.5
(more )
Specimen
9E:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
not shown:
embryonic day 10.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
Not Specified
|
Fixation:
|
4% Paraformaldehyde
|
|