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Gene Expression Data
Assay Details
Assay
Reference: J:38461 Mucchielli ML, et al., Otlx2, an Otx-related homeobox gene expressed in the pituitary gland and in a restricted pattern in the forebrain. Mol Cell Neurosci. 1996;8(4):258-71
Assay type: RNA in situ
MGI Accession ID: MGI:5464894
Gene symbol: Pitx2
Gene name: paired-like homeodomain transcription factor 2
Probe: Otlx2 cDNA2
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen not shown: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: oral region Present Regionally restricted Expressed in the oral epithelium/ectoderm.

Specimen 2A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: oral region Present Regionally restricted 2A Expressed in the oral ectoderm.
TS15: 1st branchial arch maxillary component mesenchyme Strong 2A Expressed in the maxillary mesenchyme just posterior to the optic cup.
TS15: future midbrain Weak Regionally restricted 2A Faint expression in the basal plate just rostral to the mesencephalic flexure.

Specimen not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: forelimb bud mesenchyme Present Regionally restricted Expressed in the mesenchyme at the basis of the forelimb.

Specimen 2B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: oral epithelium Present 2B Expressed in the oral ectoderm.
TS17: eye mesenchyme Present 2B
TS17: dermomyotome Weak 2B
TS17: forelimb bud mesenchyme Weak 2B
TS17: trunk Weak 2B
TS17: midbrain Strong Regionally restricted 2B Expressed in the basal plate, and extended from the middle part of the mesencephalon to the future mammillary region.
TS17: diencephalon Present Regionally restricted 2B Expressed as a small triangular dorsal extension in the middiencephalic region, prefiguring the zona limitans intrathalamica.

Specimen 3A: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: forebrain Present Regionally restricted 3A Expression is restricted to the mammillary area (basal prosomere 4) and extends to the ventricular zone.

Specimen 3B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: midbrain Present Graded 3B Expressed in a clear rostrocaudal gradient. Expressed in the basal plate of the anterior part in two layers.
TS19: forebrain Strong Regionally restricted 3B Expressed in the basal plate of the caudal prosencephalon (prosomere 1-4).
TS19: metencephalon basal plate Present Regionally restricted 3B Expressed in the first rhombomere.

Specimen 3C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: metencephalon basal plate Present Regionally restricted 3C Expressed in the first rhombomere.
TS19: midbrain Present Regionally restricted 3C Expressed in the mesencephalic alar (future superior colliculus). Expression is strongest at the mesencephalic/prosomere1 boundary and declines caudally.
TS19: diencephalon Present Regionally restricted 3C Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.

Specimen 3D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midbrain Present Regionally restricted 3D Expressed in the superficial alar plate (future superior colliculus), and the subventricular basal plate. The two domains are discontinuous with each other.
TS20: metencephalon basal plate Present Regionally restricted 3D Expressed in the first rhombomere.

Specimen 4A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Present 4A
TS20: midbrain Present Regionally restricted 4A Expressed in the alar plate of the rostral region (future superior colliculus), and the basal plate. The two domains are discontinuous with each other.
TS20: metencephalon basal plate Present Regionally restricted 4A Expressed in the first rhombomere.
TS20: forebrain Present Regionally restricted 4A Homogeneously strong expression in the prosencephalon, with a sharp rostal limit at the prosomeric 4/5 boundary.

Specimen 4B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord lateral wall Present Regionally restricted 4B Expressed in the area dorsal to the motoneurons, but not in the ventricular layer where proliferating neuroblasts are found.

Specimen not shown: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: neural tube lateral wall Present Regionally restricted Expressed as a thin column along the entire length of the spinal cord, dorsal to the motor columns. No expression in the ventricular layer where proliferating neuroblasts are found.

Specimen 5A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: midbrain Present Regionally restricted 5A Expression extends to the pretectal area. The caudal limit of the expression in the mesencephalic basal plate has retracted.
TS21: diencephalon Present Regionally restricted 5A A fainter and more diffuse expression in the alar plate of prosomere 1. Expressed in the entire mammillary area (basal prosomere 4). Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.
TS21: metencephalon basal plate Present Regionally restricted 5A Expressed in the first rhombomere.

Specimen 5B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: midbrain Present Regionally restricted 5B The caudal limit of the expression in the mesencephalic basal plate has retracted.
TS21: diencephalon Present Regionally restricted 5B Expressed in the entire mammillary area (basal prosomere 4), including the ventral midline. Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.

Specimen 5C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Present Regionally restricted 5C Expressed in the entire mammillary area (basal prosomere 4).

Specimen 5D: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Present Regionally restricted 5D Expressed in the entire mammillary area (basal prosomere 4), including the ventral midline. Expressed in a thin dorsal extension at the prosomere 2/3 boundary corresponding to the zona limitans.

Specimen 6A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 6A Expressed in three patches underlining the prosomere 2/3, prosomere 3/4, and prosomere 4/5 boundaries.

Specimen 6B: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 6B Expressed in the mamillary region.
TS24: zona incerta Present Regionally restricted 6B Expressed in the dorsal part of the zona incerta in continuity with a thin dorsal extension corresponding to the zona limitans
TS24: zona limitans intrathalamica Present 6B
TS24: prethalamus Present 6B Expressed in the subthalamic nucleus.

Specimen 6C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 6C Expressed in the mamillary region.
TS24: zona incerta Present Regionally restricted 6C Expressed in the dorsal part of the zona incerta in continuity with a thin dorsal extension corresponding to the zona limitans
TS24: zona limitans intrathalamica Present 6C
TS24: midbrain tegmentum Present 6C Expression in prerubral tegmentum.
TS24: pretectum Present 6C
TS24: superior colliculus Present 6C
TS24: prethalamus Present 6C Expressed in the subthalamic nucleus.

Specimen 6D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 6D Expressed in the prerubral tegmentum, pretectum, superior colliculus, and mamillary region.

Specimen 8A: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: diencephalon Present Regionally restricted 8A Expressed along the zona limitans, probably corresponding to the intergeniculate leaflet and the deep part of the thalamic reticular nucleus.
TS27: subthalamic nucleus Present 8A
TS27: zona incerta Present Regionally restricted 8A Expressed in the zona incerta pars dorsalis.

Specimen 8B: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: subthalamic nucleus Present 8B
TS27: zona incerta Present Regionally restricted 8B Expressed in the zona incerta pars dorsalis.

Specimen 8C: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: diencephalon Present Regionally restricted 8C Expressed in the prerubral tegmentum.

Specimen 9A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: Rathke's pouch Present 9A Expressed in the roof of the stomatodeum.

Specimen 9B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: Rathke's pouch Present Regionally restricted 9B Expressed in a ring-like pattern.

Specimen 9C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: Rathke's pouch Present Uniform 9C Homogeneously expressed.

Specimen 9D: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: adenohypophysis pars anterior Weak Uniform 9D Homogeneously expressed in the anterior lobe.
TS21: adenohypophysis pars intermedia Weak Uniform 9D Homogeneously expressed in the intermediate lobe.

Specimen 9E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: adenohypophysis pars anterior Weak Uniform 9E Homogeneously expressed in the anterior lobe.
TS24: adenohypophysis pars intermedia Weak Uniform 9E Homogeneously expressed in the intermediate lobe.

Specimen not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 1st branchial arch mesenchyme Present


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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory