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Gene Expression Data
Assay Details
Assay
Reference: J:28311 Neubuser A, et al., Characterization and developmental expression of Pax9, a paired-box-containing gene related to Pax1. Dev Biol. 1995 Aug;170(2):701-16
Assay type: RNA in situ
MGI Accession ID: MGI:5463621
Gene symbol: Pax1
Gene name: paired box 1
Probe: Pax1 probe16
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 4B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: sclerotome Present Regionally restricted 4B Expression is initially more uniform and in more mature sclerotomes becomes stronger in the caudal half.
TS15: 1st branchial pouch Present 4B
TS15: 2nd branchial pouch Present 4B
TS15: 3rd branchial pouch Weak 4B Weak or undetecable expression.
TS15: hindgut Absent 4B
TS15: tail mesenchyme Absent 4B

Specimen 4D: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud Present Regionally restricted 4D Expression is in the anterior proximal part of the limb.
TS17: 3rd branchial pouch Strong 4D

Specimen 4F: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindlimb bud Present 4F
TS19: nephric duct Present 4F
TS19: head mesenchyme Present Regionally restricted 4F Expression is in facial mesenchyme.

Specimen 6C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: axial skeleton Strong Regionally restricted 6C Expression is medial from the spinal nerves in the condensations that will give rise to the intervertebral discs. Lateral expression is very weak.
TS19: nephric duct Present 6C

Specimen 6F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: axial skeleton Strong Regionally restricted 6F Expression is medially and ventromedially to the vertebral arteries and is weak lateral of the vertebral arteries.

Specimen 6I: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: trunk Strong Regionally restricted 6I Expression is in the mesenchyme around the vertebral body and is absent lateral to the rib primordia.
TS20: axial skeleton Strong Regionally restricted 6I Expression is in the intervertebral disc primordia.

Specimen 6L: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: tail mesenchyme Present Regionally restricted 6L Expression is in sclerotome-derived mesenchyme.
TS20: tail Present Regionally restricted 6L Absent in mesenchyme lateral and ventral to the tail artery and vein, or lateral to the muscle primordia.

Specimen 9C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: knee mesenchyme Weak Regionally restricted 9C Expression is at the distal end of the femur and between the tibia and fibular primordia.

Specimen 9F: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: foot Absent 9F


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory