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Gene Expression Data
Assay Details
Assay
Reference: J:28311 Neubuser A, et al., Characterization and developmental expression of Pax9, a paired-box-containing gene related to Pax1. Dev Biol. 1995 Aug;170(2):701-16
Assay type: RNA in situ
MGI Accession ID: MGI:5463489
Gene symbol: Pax9
Gene name: paired box 9
Probe: Pax9 probe1
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 5B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: sclerotome Present 5B

Specimen 5D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: hindgut Present Regionally restricted 5D Expression is in the epithelium caudal to the cloacal membrane.
TS15: trunk mesenchyme Present Regionally restricted 5D Expression is in the ventral mesenchyme underlying the hindgut.
TS15: tail unsegmented mesenchyme Absent 5D

Specimen 5F: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: trunk paraxial mesenchyme Present Regionally restricted 5F Expression is in the mesenchymal cells of the perichordal tube surrounding the notochord.
TS17: sclerotome Present 5F

Specimen 6B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: axial skeleton Strong Regionally restricted 6B Expression is in the mesenchymal condensations between the spinal nerves of two adjacent segments and further laterally. Expression in the medial condensation is weaker.

Specimen 6E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: axial skeleton Present Regionally restricted 6E Expression is in the anlagen of the intervertebral discs and around the anlagen of the vertebral bodies. Strong expression is lateral to the vertebral arteries and weak medially.

Specimen 6H: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: vertebral cartilage condensation Present Regionally restricted 6H Expression extends dorsolaterally into the condensations for the neural arch and ventrolaterally into the mesenchyme that is lateral to the rib primordia.

Specimen 6K: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: tail mesenchyme Present Regionally restricted 6K Absent in muscle primordia.
TS20: tail nervous system Absent 6K

Specimen 9B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: knee mesenchyme Present Regionally restricted 9B Expression is in the mesenchyme between the tibia and femur primordia.

Specimen 9E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: foot Present Regionally restricted 9E Expression is anterior of the talus and naviculare primordia, between the cuneiformes and the proximal part of the metatarsals.

Specimen 10A/B: embryonic day 11.5; Pax1Un-s/Pax1Un-s (more )
Structure Level Pattern Image Note
TS19: trunk Present Regionally restricted 10A/B Expression is around and lateral to the vertebral arteries and weakly medially around the notochord and is the same as in wil-type.

Specimen 10C/D: embryonic day 12.5; Pax1un/Pax1Un-s (more )
Structure Level Pattern Image Note
TS20: trunk Present Regionally restricted 10C/D Expression is between the spinal nerves and extends laterally while expression medially around the notochord is weaker.

Specimen Not shown E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: trunk mesenchyme Weak Expression is in the mesenchyme between the capita of the ribs and between the neural arches and around the primordia of the vertebral bodies.
TS22: intervertebral disc Weak
TS22: vertebral cartilage condensation Weak Regionally restricted Expression is at sites of articulation.

Specimen Not shown E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: tail vertebra Trace
TS24: vertebra Trace


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory