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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423672
Gene symbol: St6galnac4
Gene name: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
Probe: EH3179 probe 3109
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EH3179; Specimen C3184: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C3184_3_4B
TS22: central nervous system Strong Regionally restricted Embryo_C3184_3_4B
TS22: telencephalon Strong Regionally restricted Embryo_C3184_3_2A
TS22: cerebral cortex Strong Regionally restricted Embryo_C3184_3_5A
TS22: neocortex Strong Regionally restricted Embryo_C3184_3_5A
TS22: olfactory cortex Absent
TS22: main olfactory bulb Absent
TS22: piriform cortex Absent
TS22: hippocampus Strong Regionally restricted Embryo_C3184_3_3A
TS22: basal ganglia Strong Regionally restricted Embryo_C3184_3_2A
TS22: corpus striatum Strong Regionally restricted Embryo_C3184_3_2A Expression was strong in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Moderate Regionally restricted Embryo_C3184_3_5A
TS22: pallidum Moderate Regionally restricted Embryo_C3184_3_5A Expression was detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Absent
TS22: thalamus Absent
TS22: hypothalamus Absent
TS22: midbrain Strong Regionally restricted Embryo_C3184_3_4A
TS22: pretectum Absent
TS22: superior colliculus Strong Regionally restricted Embryo_C3184_3_4B
TS22: inferior colliculus Strong Regionally restricted Embryo_C3184_3_4B
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C3184_3_4A
TS22: hindbrain Strong Regionally restricted Embryo_C3184_3_3D
TS22: cerebellum Strong Regionally restricted Embryo_C3184_3_4A
TS22: pons Strong Regionally restricted Embryo_C3184_3_3D
TS22: medulla oblongata Absent
TS22: spinal cord Strong Regionally restricted Embryo_C3184_3_4C
TS22: choroid plexus Strong Regionally restricted Embryo_C3184_3_4A
TS22: meninges Strong Regionally restricted Embryo_C3184_3_6B
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C3184_3_3B
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Moderate Ubiquitous Embryo_C3184_3_3B
TS22: eye Strong Regionally restricted Embryo_C3184_3_1B
TS22: retina Moderate Regionally restricted Embryo_C3184_3_1C
TS22: lens Strong Regionally restricted Embryo_C3184_3_1B
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Absent
TS22: olfactory epithelium Absent
TS22: ear Strong Regionally restricted Embryo_C3184_3_1B
TS22: inner ear Strong Regionally restricted Embryo_C3184_3_1B
TS22: cochlea Moderate Regionally restricted Embryo_C3184_3_5B
TS22: inner ear labyrinth Strong Regionally restricted Embryo_C3184_3_1B
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C3184_3_3B Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C3184_3_4B
TS22: salivary gland Strong Ubiquitous Embryo_C3184_3_3B
TS22: tongue Absent
TS22: tooth Strong Ubiquitous Embryo_C3184_3_4B
TS22: palatal shelf Absent
TS22: esophagus Weak Regionally restricted Embryo_C3184_3_4B
TS22: stomach Moderate Regionally restricted Embryo_C3184_3_1D
TS22: liver Strong Ubiquitous Embryo_C3184_3_2A
TS22: respiratory system Strong Regionally restricted Embryo_C3184_3_3B
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Moderate Regionally restricted Embryo_C3184_3_4C
TS22: main bronchus Absent
TS22: lung Strong Regionally restricted Embryo_C3184_3_3B
TS22: urinary system Strong Regionally restricted Embryo_C3184_3_3B Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C3184_3_3B
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Absent
TS22: genital tubercle Absent
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C3184_3_4D Expression was detected in the endocrine system.
TS22: thyroid gland Moderate Ubiquitous Embryo_C3184_3_4D
TS22: pituitary gland Absent
TS22: pancreas Moderate Regionally restricted Embryo_C3184_3_3A
TS22: adrenal gland Absent
TS22: cardiovascular system Strong Regionally restricted Embryo_C3184_3_4C
TS22: heart Strong Regionally restricted Embryo_C3184_3_4C
TS22: heart atrium Strong Regionally restricted Embryo_C3184_3_4C
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Strong Regionally restricted Embryo_C3184_3_4D Expression was strong in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Strong Ubiquitous Embryo_C3184_3_4D
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Moderate Regionally restricted Embryo_C3184_3_4D
TS22: forelimb Strong Regionally restricted Embryo_C3184_3_1C
TS22: hindlimb Strong Regionally restricted Embryo_C3184_3_1C
TS22: integumental system Strong Regionally restricted Embryo_C3184_3_6D
TS22: skin Absent
TS22: hair Strong Regionally restricted Embryo_C3184_3_6D
TS22: vibrissa follicle Strong Regionally restricted Embryo_C3184_3_6D Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory