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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423597
Gene symbol: Slc13a1
Gene name: solute carrier family 13 (sodium/sulfate symporters), member 1
Probe: EH1499 probe 1446
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EH1499; Specimen C2680: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C2680_4_4A
TS22: central nervous system Strong Regionally restricted Embryo_C2680_4_4A
TS22: telencephalon Weak Regionally restricted Embryo_C2680_4_1D
TS22: cerebral cortex Absent
TS22: neocortex Absent
TS22: olfactory cortex Weak Regionally restricted Embryo_C2680_4_2D
TS22: main olfactory bulb Absent
TS22: piriform cortex Weak Regionally restricted Embryo_C2680_4_2D
TS22: hippocampus Absent
TS22: basal ganglia Weak Regionally restricted Embryo_C2680_4_1D
TS22: corpus striatum Absent Expression was not detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Ubiquitous Embryo_C2680_4_1D
TS22: telencephalon septum Absent
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Absent
TS22: thalamus Absent
TS22: hypothalamus Absent
TS22: midbrain Weak Regionally restricted Embryo_C2680_4_3C
TS22: pretectum Absent
TS22: superior colliculus Absent
TS22: inferior colliculus Absent
TS22: midbrain tegmentum Weak Regionally restricted Embryo_C2680_4_3C
TS22: hindbrain Strong Regionally restricted Embryo_C2680_4_4A
TS22: cerebellum Absent
TS22: pons Strong Regionally restricted Embryo_C2680_4_4A
TS22: medulla oblongata Strong Regionally restricted Embryo_C2680_4_4A
TS22: spinal cord Strong Regionally restricted Embryo_C2680_4_4B
TS22: choroid plexus Strong Regionally restricted Embryo_C2680_4_3A
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C2680_4_2B
TS22: cranial ganglion Moderate Regionally restricted Embryo_C2680_4_2B
TS22: dorsal root ganglion Absent
TS22: eye Strong Regionally restricted Embryo_C2680_4_1A
TS22: retina Absent
TS22: lens Strong Regionally restricted Embryo_C2680_4_1A
TS22: cornea Moderate Regionally restricted Embryo_C2680_4_1A
TS22: optic nerve Weak Regionally restricted Embryo_C2680_4_2B
TS22: nose Moderate Regionally restricted Embryo_C2680_4_3C
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C2680_4_3C
TS22: ear Moderate Regionally restricted Embryo_C2680_4_1A
TS22: inner ear Absent
TS22: cochlea Absent
TS22: inner ear labyrinth Absent
TS22: middle ear Moderate Regionally restricted Embryo_C2680_4_1A
TS22: alimentary system Strong Regionally restricted Embryo_C2680_4_4C Expression was strong in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_C2680_4_4A
TS22: salivary gland Weak Regionally restricted Embryo_C2680_4_3C
TS22: tongue Strong Regionally restricted Embryo_C2680_4_4A
TS22: tooth Weak Regionally restricted Embryo_C2680_4_5B
TS22: palatal shelf Moderate Regionally restricted Embryo_C2680_4_4A
TS22: esophagus Strong Regionally restricted Embryo_C2680_4_4C
TS22: stomach Moderate Regionally restricted Embryo_C2680_4_3A
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_C2680_4_4A
TS22: pharynx Moderate Regionally restricted Embryo_C2680_4_4B
TS22: larynx Weak Regionally restricted Embryo_C2680_4_4B
TS22: trachea Moderate Regionally restricted Embryo_C2680_4_4C
TS22: main bronchus Strong Regionally restricted Embryo_C2680_4_4A
TS22: lung Moderate Regionally restricted Embryo_C2680_4_4A
TS22: urinary system Strong Regionally restricted Embryo_C2680_4_3A Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C2680_4_3A
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_C2680_4_4B
TS22: urethra Moderate Regionally restricted Embryo_C2680_4_4B
TS22: reproductive system Moderate Regionally restricted Embryo_C2680_4_4B
TS22: genital tubercle Moderate Regionally restricted Embryo_C2680_4_4B
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_C2680_4_4A Expression was weak in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Weak Regionally restricted Embryo_C2680_4_4A
TS22: pancreas Weak Regionally restricted Embryo_C2680_4_3B
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C2680_4_5A
TS22: heart Weak Regionally restricted Embryo_C2680_4_5A
TS22: heart atrium Weak Regionally restricted Embryo_C2680_4_5A
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Weak Regionally restricted Embryo_C2680_4_4B Expression was weak in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Weak Regionally restricted Embryo_C2680_4_4B
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Ubiquitous Embryo_C2680_4_1C
TS22: face Weak Regionally restricted Embryo_C2680_4_4B Expression was weak in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Strong Regionally restricted Embryo_C2680_4_1A Expression was strong in the skull (base and vault).
TS22: axial skeleton Strong Regionally restricted Embryo_C2680_4_2B
TS22: tail Strong Regionally restricted Embryo_C2680_4_4A
TS22: forelimb Moderate Regionally restricted Embryo_C2680_4_1A
TS22: hindlimb Moderate Regionally restricted Embryo_C2680_4_1A
TS22: integumental system Moderate Regionally restricted Embryo_C2680_4_4B
TS22: skin Moderate Regionally restricted Embryo_C2680_4_4B
TS22: hair Moderate Regionally restricted Embryo_C2680_4_2A
TS22: vibrissa follicle Moderate Regionally restricted Embryo_C2680_4_2A Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory