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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423465
Gene symbol: Oat
Gene name: ornithine aminotransferase
Probe: EH197 probe 251
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EH197; Specimen C2154: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C2154_3_4A
TS22: central nervous system Strong Regionally restricted Embryo_C2154_3_4A
TS22: telencephalon Strong Regionally restricted Embryo_C2154_3_4A
TS22: cerebral cortex Strong Regionally restricted Embryo_C2154_3_3B
TS22: neocortex Strong Regionally restricted Embryo_C2154_3_3B
TS22: olfactory cortex Strong Regionally restricted Embryo_C2154_3_4A
TS22: main olfactory bulb Strong Regionally restricted Embryo_C2154_3_4A
TS22: piriform cortex Absent
TS22: hippocampus Moderate Regionally restricted Embryo_C2154_3_2D
TS22: basal ganglia Moderate Regionally restricted Embryo_C2154_3_3C
TS22: corpus striatum Moderate Regionally restricted Embryo_C2154_3_1D Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Weak Regionally restricted Embryo_C2154_3_3C
TS22: pallidum Moderate Regionally restricted Embryo_C2154_3_3C Expression was detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Moderate Regionally restricted Embryo_C2154_3_4B
TS22: thalamus Moderate Regionally restricted Embryo_C2154_3_4B
TS22: hypothalamus Moderate Regionally restricted Embryo_C2154_3_4B
TS22: midbrain Moderate Regionally restricted Embryo_C2154_3_4B
TS22: pretectum Moderate Regionally restricted Embryo_C2154_3_4B
TS22: superior colliculus Moderate Regionally restricted Embryo_C2154_3_4B
TS22: inferior colliculus Moderate Regionally restricted Embryo_C2154_3_4B
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C2154_3_4B
TS22: hindbrain Moderate Regionally restricted Embryo_C2154_3_3B
TS22: cerebellum Weak Regionally restricted Embryo_C2154_3_3B
TS22: pons Moderate Regionally restricted Embryo_C2154_3_3B
TS22: medulla oblongata Moderate Regionally restricted Embryo_C2154_3_3B
TS22: spinal cord Moderate Regionally restricted Embryo_C2154_3_4A
TS22: choroid plexus Moderate Regionally restricted Embryo_C2154_3_3A
TS22: meninges Moderate Regionally restricted Embryo_C2154_3_5B
TS22: peripheral nervous system Absent
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Absent
TS22: eye Strong Regionally restricted Embryo_C2154_3_1A
TS22: retina Absent
TS22: lens Strong Regionally restricted Embryo_C2154_3_1A
TS22: cornea Strong Regionally restricted Embryo_C2154_3_1A
TS22: optic nerve Absent
TS22: nose Absent
TS22: olfactory epithelium Absent
TS22: ear Moderate Regionally restricted Embryo_C2154_3_3A
TS22: inner ear Moderate Regionally restricted Embryo_C2154_3_3A
TS22: cochlea Moderate Regionally restricted Embryo_C2154_3_3A
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C2154_3_1B
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C2154_3_4B Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C2154_3_4B
TS22: salivary gland Absent
TS22: tongue Weak Regionally restricted Embryo_C2154_3_4A
TS22: tooth Weak Regionally restricted Embryo_C2154_3_5B
TS22: palatal shelf Absent
TS22: esophagus Weak Regionally restricted Embryo_C2154_3_4B
TS22: stomach Moderate Regionally restricted Embryo_C2154_3_1D
TS22: liver Moderate Regionally restricted Embryo_C2154_3_4B
TS22: respiratory system Moderate Regionally restricted Embryo_C2154_3_4A
TS22: pharynx Weak Regionally restricted Embryo_C2154_3_4A
TS22: larynx Moderate Regionally restricted Embryo_C2154_3_4A
TS22: trachea Moderate Regionally restricted Embryo_C2154_3_4A
TS22: main bronchus Weak Regionally restricted Embryo_C2154_3_3B
TS22: lung Moderate Scattered Embryo_C2154_3_5D
TS22: urinary system Moderate Regionally restricted Embryo_C2154_3_5B Expression was detected in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted Embryo_C2154_3_3B
TS22: ureter Absent
TS22: bladder Moderate Regionally restricted Embryo_C2154_3_5B
TS22: urethra Absent
TS22: reproductive system Moderate Regionally restricted Embryo_C2154_3_5B
TS22: genital tubercle Moderate Regionally restricted Embryo_C2154_3_5B
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C2154_3_3B Expression was detected in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_C2154_3_4B
TS22: pituitary gland Moderate Regionally restricted Embryo_C2154_3_4B
TS22: pancreas Moderate Regionally restricted Embryo_C2154_3_3B
TS22: adrenal gland Weak Regionally restricted Embryo_C2154_3_3B
TS22: cardiovascular system Strong Regionally restricted Embryo_C2154_3_5A
TS22: heart Strong Regionally restricted Embryo_C2154_3_5A
TS22: heart atrium Moderate Regionally restricted Embryo_C2154_3_4C
TS22: heart ventricle Moderate Regionally restricted Embryo_C2154_3_3A
TS22: blood vessel Moderate Regionally restricted Embryo_C2154_3_4A
TS22: hemolymphoid system Weak Regionally restricted Embryo_C2154_3_3D Expression was weak in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Weak Regionally restricted Embryo_C2154_3_3D
TS22: appendicular skeleton Strong Regionally restricted Embryo_C2154_3_1A Expression was strong in the skeleton (limbs, shoulder, hip).
TS22: musculature Strong Regionally restricted Embryo_C2154_3_3A
TS22: face Strong Regionally restricted Embryo_C2154_3_4A Expression was strong in the face/soft tissues.
TS22: facial bone primordium Moderate Regionally restricted Embryo_C2154_3_4B
TS22: cranium Moderate Regionally restricted Embryo_C2154_3_4C Expression was detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Strong Regionally restricted Embryo_C2154_3_4B
TS22: forelimb Strong Regionally restricted Embryo_C2154_3_1B
TS22: hindlimb Strong Regionally restricted Embryo_C2154_3_6D
TS22: integumental system Strong Regionally restricted Embryo_C2154_3_4B
TS22: skin Strong Regionally restricted Embryo_C2154_3_4B
TS22: hair Moderate Regionally restricted Embryo_C2154_3_2D
TS22: vibrissa follicle Moderate Regionally restricted Embryo_C2154_3_2D Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory