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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423395
Gene symbol: Atp6v1d
Gene name: ATPase, H+ transporting, lysosomal V1 subunit D
Probe: EN730 probe 622
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EN730; Specimen N365: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_N365_5_3C
TS22: central nervous system Strong Regionally restricted Embryo_N365_5_3C
TS22: telencephalon Strong Regionally restricted Embryo_N365_5_3C
TS22: cerebral cortex Strong Regionally restricted Embryo_N365_5_3C
TS22: neocortex Moderate Regionally restricted Embryo_N365_5_3C
TS22: olfactory cortex Strong Regionally restricted Embryo_N365_5_3C
TS22: main olfactory bulb Strong Regionally restricted Embryo_N365_5_3D
TS22: piriform cortex Moderate Ubiquitous Embryo_N365_5_2B
TS22: hippocampus Moderate Regionally restricted Embryo_N365_5_3C
TS22: basal ganglia Weak Ubiquitous Embryo_N365_5_3C
TS22: corpus striatum Weak Ubiquitous Embryo_N365_5_3B Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Ubiquitous Embryo_N365_5_5A
TS22: amygdala Weak Ubiquitous Embryo_N365_5_2A
TS22: telencephalon septum Weak Ubiquitous Embryo_N365_5_3C
TS22: pallidum Weak Ubiquitous Embryo_N365_5_3C Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Ubiquitous Embryo_N365_5_3C
TS22: thalamus Weak Ubiquitous Embryo_N365_5_3C
TS22: hypothalamus Weak Ubiquitous Embryo_N365_5_3C
TS22: midbrain Moderate Ubiquitous Embryo_N365_5_3A
TS22: pretectum Weak Ubiquitous Embryo_N365_5_3A
TS22: superior colliculus Moderate Ubiquitous Embryo_N365_5_3A
TS22: inferior colliculus Moderate Ubiquitous Embryo_N365_5_3A
TS22: midbrain tegmentum Moderate Ubiquitous Embryo_N365_5_3A
TS22: hindbrain Moderate Ubiquitous Embryo_N365_5_2D
TS22: cerebellum Moderate Regionally restricted Embryo_N365_5_2D
TS22: pons Moderate Regionally restricted Embryo_N365_5_2D
TS22: medulla oblongata Moderate Ubiquitous Embryo_N365_5_2D
TS22: spinal cord Moderate Ubiquitous Embryo_N365_5_2D
TS22: choroid plexus Strong Regionally restricted Embryo_N365_5_3A
TS22: meninges Absent
TS22: peripheral nervous system Strong Regionally restricted Embryo_N365_5_2C
TS22: cranial ganglion Strong Regionally restricted Embryo_N365_5_2C
TS22: dorsal root ganglion Strong Regionally restricted Embryo_N365_5_4A
TS22: eye Moderate Regionally restricted Embryo_N365_5_1B
TS22: retina Moderate Regionally restricted Embryo_N365_5_1B
TS22: lens Weak Regionally restricted Embryo_N365_5_1A
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Strong Regionally restricted Embryo_N365_5_4A
TS22: olfactory epithelium Strong Regionally restricted Embryo_N365_5_4A
TS22: ear Weak Regionally restricted Embryo_N365_5_2C
TS22: inner ear Weak Regionally restricted Embryo_N365_5_2C
TS22: cochlea Weak Regionally restricted Embryo_N365_5_2C
TS22: inner ear labyrinth Weak Regionally restricted Embryo_N365_5_1B
TS22: middle ear Weak Regionally restricted Embryo_N365_5_1A
TS22: alimentary system Strong Regionally restricted Embryo_N365_5_2B Expression was strong in the digestive system.
TS22: intestine Absent
TS22: salivary gland Strong Regionally restricted Embryo_N365_5_2B
TS22: tongue Absent
TS22: tooth Weak Regionally restricted Embryo_N365_5_4C
TS22: palatal shelf Absent
TS22: esophagus Weak Regionally restricted Embryo_N365_5_3A
TS22: stomach Weak Regionally restricted Embryo_N365_5_1A
TS22: liver Absent
TS22: respiratory system Moderate Regionally restricted Embryo_N365_5_3C
TS22: pharynx Moderate Regionally restricted Embryo_N365_5_3C
TS22: larynx Moderate Regionally restricted Embryo_N365_5_3C
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_N365_5_2B
TS22: urinary system Moderate Regionally restricted Embryo_N365_5_4A Expression was detected in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_N365_5_2B
TS22: ureter Absent
TS22: bladder Moderate Regionally restricted Embryo_N365_5_4A
TS22: urethra Moderate Regionally restricted Embryo_N365_5_4A
TS22: reproductive system Moderate Regionally restricted Embryo_N365_5_4B
TS22: genital tubercle Moderate Regionally restricted Embryo_N365_5_4B
TS22: gonad Absent
TS22: gland Strong Regionally restricted Embryo_N365_5_3B Expression was strong in the endocrine system.
TS22: thyroid gland Moderate Ubiquitous Embryo_N365_5_3A
TS22: pituitary gland Strong Ubiquitous Embryo_N365_5_3B
TS22: pancreas Absent
TS22: adrenal gland Weak Ubiquitous Embryo_N365_5_2B
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Moderate Regionally restricted Embryo_N365_5_3A Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Ubiquitous Embryo_N365_5_3A
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Regionally restricted Embryo_N365_5_1D Expression was weak in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Moderate Regionally restricted Embryo_N365_5_4D
TS22: forelimb Moderate Regionally restricted Embryo_N365_5_6B
TS22: hindlimb Moderate Regionally restricted Embryo_N365_5_6B
TS22: integumental system Strong Regionally restricted Embryo_N365_5_2C
TS22: skin Strong Regionally restricted Embryo_N365_5_2C
TS22: hair Strong Regionally restricted Embryo_N365_5_2C
TS22: vibrissa follicle Strong Regionally restricted Embryo_N365_5_2C Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/30/2024
MGI 6.23 		The Jackson Laboratory