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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5423220
Gene symbol: Bcat2
Gene name: branched chain aminotransferase 2, mitochondrial
Probe: EN383 probe 320
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EN383; Specimen N279: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_N279_3_5A
TS22: central nervous system Strong Regionally restricted Embryo_N279_3_3B
TS22: telencephalon Strong Regionally restricted Embryo_N279_3_3B
TS22: cerebral cortex Strong Regionally restricted Embryo_N279_3_3B
TS22: neocortex Moderate Ubiquitous Embryo_N279_3_3B
TS22: olfactory cortex Strong Regionally restricted Embryo_N279_3_3B
TS22: main olfactory bulb Strong Regionally restricted Embryo_N279_3_3B
TS22: piriform cortex Moderate Regionally restricted Embryo_N279_3_1B
TS22: hippocampus Moderate Ubiquitous Embryo_N279_3_3B
TS22: basal ganglia Moderate Regionally restricted Embryo_N279_3_1C
TS22: corpus striatum Weak Ubiquitous Embryo_N279_3_2B Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Ubiquitous Embryo_N279_3_3B
TS22: amygdala Moderate Ubiquitous Embryo_N279_3_1C
TS22: telencephalon septum Weak Ubiquitous Embryo_N279_3_3B
TS22: pallidum Weak Ubiquitous Embryo_N279_3_3B Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Moderate Ubiquitous Embryo_N279_3_3A
TS22: thalamus Moderate Ubiquitous Embryo_N279_3_3A
TS22: hypothalamus Moderate Ubiquitous Embryo_N279_3_3B
TS22: midbrain Strong Ubiquitous Embryo_N279_3_4A
TS22: pretectum Moderate Ubiquitous Embryo_N279_3_3A
TS22: superior colliculus Strong Regionally restricted Embryo_N279_3_4A
TS22: inferior colliculus Strong Regionally restricted Embryo_N279_3_3D
TS22: midbrain tegmentum Strong Regionally restricted Embryo_N279_3_4A
TS22: hindbrain Strong Regionally restricted Embryo_N279_3_4A
TS22: cerebellum Strong Regionally restricted Embryo_N279_3_3B
TS22: pons Strong Regionally restricted Embryo_N279_3_4A
TS22: medulla oblongata Strong Ubiquitous Embryo_N279_3_4A
TS22: spinal cord Strong Regionally restricted Embryo_N279_3_4A
TS22: choroid plexus Strong Regionally restricted Embryo_N279_3_4A
TS22: meninges Moderate Regionally restricted Embryo_N279_3_2B
TS22: peripheral nervous system Strong Ubiquitous Embryo_N279_3_2B
TS22: cranial ganglion Strong Ubiquitous Embryo_N279_3_2B
TS22: dorsal root ganglion Strong Ubiquitous Embryo_N279_3_5A
TS22: eye Strong Regionally restricted Embryo_N279_3_1A
TS22: retina Strong Regionally restricted Embryo_N279_3_1A
TS22: lens Absent
TS22: cornea Moderate Regionally restricted Embryo_N279_3_1B
TS22: optic nerve Absent
TS22: nose Moderate Regionally restricted Embryo_N279_3_5A
TS22: olfactory epithelium Moderate Regionally restricted Embryo_N279_3_5A
TS22: ear Strong Regionally restricted Embryo_N279_3_1A
TS22: inner ear Strong Regionally restricted Embryo_N279_3_5C
TS22: cochlea Strong Regionally restricted Embryo_N279_3_5A
TS22: inner ear labyrinth Strong Regionally restricted Embryo_N279_3_5C
TS22: middle ear Strong Regionally restricted Embryo_N279_3_1A
TS22: alimentary system Strong Regionally restricted Embryo_N279_3_5A Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_N279_3_3D
TS22: salivary gland Strong Ubiquitous Embryo_N279_3_5A
TS22: tongue Weak Regionally restricted Embryo_N279_3_3C
TS22: tooth Moderate Regionally restricted Embryo_N279_3_3C
TS22: palatal shelf Moderate Regionally restricted Embryo_N279_3_4A
TS22: esophagus Strong Regionally restricted Embryo_N279_3_3D
TS22: stomach Strong Regionally restricted Embryo_N279_3_2A
TS22: liver Strong Regionally restricted Embryo_N279_3_3A
TS22: respiratory system Strong Regionally restricted Embryo_N279_3_4A
TS22: pharynx Strong Regionally restricted Embryo_N279_3_4A
TS22: larynx Moderate Regionally restricted Embryo_N279_3_4A
TS22: trachea Moderate Regionally restricted Embryo_N279_3_4A
TS22: main bronchus Absent
TS22: lung Strong Regionally restricted Embryo_N279_3_5A
TS22: urinary system Strong Regionally restricted Embryo_N279_3_2A Expression was strong in the genito-urinary system.
TS22: metanephros Moderate Ubiquitous Embryo_N279_3_5A
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_N279_3_3D
TS22: urethra Weak Regionally restricted Embryo_N279_3_3D
TS22: reproductive system Strong Regionally restricted Embryo_N279_3_2A
TS22: genital tubercle Weak Regionally restricted Embryo_N279_3_3D
TS22: gonad Strong Regionally restricted Embryo_N279_3_2A
TS22: gland Moderate Regionally restricted Embryo_N279_3_3D Expression was detected in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_N279_3_3C
TS22: pituitary gland Moderate Regionally restricted Embryo_N279_3_3D
TS22: pancreas Absent
TS22: adrenal gland Weak Ubiquitous Embryo_N279_3_5A
TS22: cardiovascular system Strong Regionally restricted Embryo_N279_3_3A
TS22: heart Strong Regionally restricted Embryo_N279_3_3A
TS22: heart atrium Strong Regionally restricted Embryo_N279_3_3A
TS22: heart ventricle Strong Regionally restricted Embryo_N279_3_3A
TS22: blood vessel Strong Regionally restricted Embryo_N279_3_3A
TS22: hemolymphoid system Moderate Regionally restricted Embryo_N279_3_3D Expression was detected in the immune system.
TS22: spleen primordium Weak Ubiquitous Embryo_N279_3_1B
TS22: thymus primordium Moderate Regionally restricted Embryo_N279_3_3D
TS22: appendicular skeleton Strong Regionally restricted Embryo_N279_3_1C Expression was strong in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Ubiquitous Embryo_N279_3_2A
TS22: face Moderate Ubiquitous Embryo_N279_3_3A Expression was detected in the face/soft tissues.
TS22: facial bone primordium Moderate Regionally restricted Embryo_N279_3_3D
TS22: cranium Strong Regionally restricted Embryo_N279_3_3A Expression was strong in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_N279_3_1C
TS22: tail Strong Regionally restricted Embryo_N279_3_3D
TS22: forelimb Strong Regionally restricted Embryo_N279_3_1A
TS22: hindlimb Strong Regionally restricted Embryo_N279_3_1A
TS22: integumental system Strong Regionally restricted Embryo_N279_3_2B
TS22: skin Strong Regionally restricted Embryo_N279_3_2B
TS22: hair Moderate Ubiquitous Embryo_N279_3_2A
TS22: vibrissa follicle Moderate Ubiquitous Embryo_N279_3_2A Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
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