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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422904
Gene symbol: Abcc9
Gene name: ATP-binding cassette, sub-family C member 9
Probe: MH3342 probe 2933
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH3342; Specimen C4413: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C4413_6_4D
TS22: central nervous system Strong Scattered Embryo_C4413_6_4D
TS22: telencephalon Strong Scattered Embryo_C4413_6_4D
TS22: cerebral cortex Strong Scattered
TS22: neocortex Strong Scattered Embryo_C4413_6_4D
TS22: olfactory cortex Strong Scattered Embryo_C4413_6_4D
TS22: main olfactory bulb Strong Scattered Embryo_C4413_6_4D
TS22: piriform cortex Absent
TS22: hippocampus Strong Ubiquitous Embryo_C4413_6_4D
TS22: basal ganglia Strong Scattered Embryo_C4413_6_4D
TS22: corpus striatum Strong Scattered Embryo_C4413_6_4D Expression was strong in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Strong Scattered Embryo_C4413_6_4D
TS22: amygdala Strong Scattered Embryo_C4413_6_4D
TS22: telencephalon septum Strong Scattered Embryo_C4413_6_4D
TS22: pallidum Strong Scattered Embryo_C4413_6_4D Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Scattered Embryo_C4413_6_4D
TS22: thalamus Strong Scattered Embryo_C4413_6_4D
TS22: hypothalamus Strong Scattered Embryo_C4413_6_4D
TS22: midbrain Strong Scattered Embryo_C4413_6_4D
TS22: pretectum Strong Scattered Embryo_C4413_6_4D
TS22: superior colliculus Strong Scattered Embryo_C4413_6_4D
TS22: inferior colliculus Strong Scattered Embryo_C4413_6_4D
TS22: midbrain tegmentum Strong Scattered Embryo_C4413_6_4D
TS22: hindbrain Strong Scattered Embryo_C4413_6_4D
TS22: cerebellum Strong Scattered Embryo_C4413_6_4D
TS22: pons Strong Scattered Embryo_C4413_6_4D
TS22: medulla oblongata Strong Scattered Embryo_C4413_6_4D
TS22: spinal cord Strong Ubiquitous Embryo_C4413_6_4D
TS22: choroid plexus Strong Ubiquitous Embryo_C4413_6_4D
TS22: meninges Strong Regionally restricted Embryo_C4413_6_4B
TS22: peripheral nervous system Absent
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Absent
TS22: eye Absent
TS22: retina Absent
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Moderate Regionally restricted Embryo_C4413_6_5B
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C4413_6_5B
TS22: ear Absent
TS22: inner ear Absent
TS22: cochlea Absent
TS22: inner ear labyrinth Absent
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C4413_6_4B Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C4413_6_4B
TS22: salivary gland Moderate Regionally restricted Embryo_C4413_6_3A
TS22: tongue Strong Regionally restricted Embryo_C4413_6_4C
TS22: tooth Absent
TS22: palatal shelf Absent
TS22: esophagus Strong Regionally restricted Embryo_C4413_6_4B
TS22: stomach Strong Regionally restricted Embryo_C4413_6_2C
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_C4413_6_2C
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Strong Regionally restricted Embryo_C4413_6_2C
TS22: urinary system Strong Regionally restricted Embryo_C4413_6_3C Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C4413_6_3C
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Absent
TS22: genital tubercle Absent
TS22: gonad Absent
TS22: gland Strong Regionally restricted Embryo_C4413_6_4B Expression was strong in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Strong Regionally restricted Embryo_C4413_6_4B
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Strong Regionally restricted Embryo_C4413_6_4B
TS22: heart Strong Regionally restricted Embryo_C4413_6_4B
TS22: heart atrium Absent
TS22: heart ventricle Strong Regionally restricted Embryo_C4413_6_4B
TS22: blood vessel Absent
TS22: hemolymphoid system Strong Regionally restricted Embryo_C4413_6_4B Expression was strong in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Strong Regionally restricted Embryo_C4413_6_4B
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Strong Regionally restricted Embryo_C4413_6_5C Expression was strong in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C4413_6_4B
TS22: tail Strong Regionally restricted Embryo_C4413_6_5A
TS22: forelimb Strong Regionally restricted Embryo_C4413_6_1C
TS22: hindlimb Weak Regionally restricted Embryo_C4413_6_6C
TS22: integumental system Absent
TS22: skin Absent
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory