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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422799
Gene symbol: Efna1
Gene name: ephrin A1
Probe: HD65 probe 51
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen HD65; Specimen C1181: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Moderate Regionally restricted Embryo_C1181_3_3B
TS22: central nervous system Moderate Regionally restricted Embryo_C1181_3_3B
TS22: telencephalon Moderate Regionally restricted Embryo_C1181_3_4A
TS22: cerebral cortex Weak Regionally restricted Embryo_C1181_3_3C
TS22: neocortex Weak Scattered Embryo_C1181_3_3C
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1181_3_4A
TS22: main olfactory bulb Moderate Regionally restricted Embryo_C1181_3_4A
TS22: piriform cortex Weak Scattered Embryo_C1181_3_2B
TS22: hippocampus Weak Regionally restricted Embryo_C1181_3_3B
TS22: basal ganglia Weak Regionally restricted Embryo_C1181_3_3C
TS22: corpus striatum Weak Scattered Embryo_C1181_3_2D Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Scattered Embryo_C1181_3_2B
TS22: telencephalon septum Weak Scattered Embryo_C1181_3_3C
TS22: pallidum Weak Scattered Embryo_C1181_3_3C Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Scattered Embryo_C1181_3_3C
TS22: thalamus Weak Scattered Embryo_C1181_3_3C
TS22: hypothalamus Weak Scattered Embryo_C1181_3_3C
TS22: midbrain Weak Scattered Embryo_C1181_3_3C
TS22: pretectum Weak Scattered Embryo_C1181_3_3C
TS22: superior colliculus Weak Scattered Embryo_C1181_3_3C
TS22: inferior colliculus Weak Scattered Embryo_C1181_3_3C
TS22: midbrain tegmentum Weak Scattered Embryo_C1181_3_3C
TS22: hindbrain Weak Regionally restricted Embryo_C1181_3_3B
TS22: cerebellum Weak Scattered Embryo_C1181_3_3B
TS22: pons Weak Scattered Embryo_C1181_3_3B
TS22: medulla oblongata Weak Regionally restricted Embryo_C1181_3_3B
TS22: spinal cord Moderate Regionally restricted Embryo_C1181_3_3B
TS22: choroid plexus Moderate Scattered Embryo_C1181_3_3B
TS22: meninges Moderate Scattered Embryo_C1181_3_3B
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1181_3_3B
TS22: cranial ganglion Weak Regionally restricted Embryo_C1181_3_3B
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C1181_3_3B
TS22: eye Moderate Regionally restricted Embryo_C1181_3_2A
TS22: retina Moderate Regionally restricted Embryo_C1181_3_1A
TS22: lens Moderate Regionally restricted Embryo_C1181_3_1A
TS22: cornea Absent
TS22: optic nerve Moderate Regionally restricted Embryo_C1181_3_2A
TS22: nose Weak Regionally restricted Embryo_C1181_3_3A
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1181_3_3A
TS22: ear Moderate Regionally restricted Embryo_C1181_3_1C
TS22: inner ear Moderate Regionally restricted Embryo_C1181_3_1C
TS22: cochlea Weak Scattered Embryo_C1181_3_2D
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_C1181_3_1C
TS22: middle ear Moderate Regionally restricted Embryo_C1181_3_1D
TS22: alimentary system Strong Regionally restricted Embryo_C1181_3_4C Expression was strong in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_C1181_3_4C
TS22: salivary gland Weak Regionally restricted Embryo_C1181_3_3A
TS22: tongue Strong Regionally restricted Embryo_C1181_3_4C
TS22: tooth Moderate Regionally restricted
TS22: esophagus Weak Regionally restricted Embryo_C1181_3_4A
TS22: stomach Moderate Regionally restricted Embryo_C1181_3_2C
TS22: liver Weak Regionally restricted Embryo_C1181_3_3D
TS22: respiratory system Strong Regionally restricted Embryo_C1181_3_4A
TS22: pharynx Weak Regionally restricted Embryo_C1181_3_4B
TS22: larynx Weak Regionally restricted Embryo_C1181_3_4B
TS22: trachea Strong Regionally restricted Embryo_C1181_3_4A
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_C1181_3_3C
TS22: urinary system Strong Regionally restricted Embryo_C1181_3_4B Expression was strong in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted Embryo_C1181_3_3C
TS22: ureter Weak Regionally restricted Embryo_C1181_3_4D
TS22: bladder Strong Regionally restricted Embryo_C1181_3_4C
TS22: urethra Moderate Regionally restricted Embryo_C1181_3_4C
TS22: reproductive system Strong Regionally restricted Embryo_C1181_3_4B
TS22: genital tubercle Strong Regionally restricted Embryo_C1181_3_4B
TS22: gonad Weak Regionally restricted Embryo_C1181_3_2D
TS22: gland Moderate Regionally restricted Embryo_C1181_3_3C Expression was detected in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1181_3_3C
TS22: pituitary gland Moderate Regionally restricted Embryo_C1181_3_3C
TS22: pancreas Moderate Regionally restricted Embryo_C1181_3_3D
TS22: adrenal gland Weak Regionally restricted Embryo_C1181_3_3C
TS22: cardiovascular system Strong Regionally restricted Embryo_C1181_3_4C
TS22: heart Strong Regionally restricted Embryo_C1181_3_4C
TS22: heart atrium Strong Regionally restricted Embryo_C1181_3_4C
TS22: heart ventricle Strong Regionally restricted Embryo_C1181_3_4C
TS22: blood vessel Moderate Regionally restricted Embryo_C1181_3_3C
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C1181_3_2B Expression was detected in the immune system.
TS22: spleen primordium Moderate Regionally restricted Embryo_C1181_3_2B
TS22: thymus primordium Weak Regionally restricted Embryo_C1181_3_3C
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1181_3_6B Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_C1181_3_5D
TS22: face Strong Regionally restricted Embryo_C1181_3_4B Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Scattered Embryo_C1181_3_4B Expression was weak in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1181_3_3C
TS22: tail Strong Regionally restricted Embryo_C1181_3_4B
TS22: forelimb Moderate Regionally restricted Embryo_C1181_3_6D
TS22: hindlimb Strong Regionally restricted Embryo_C1181_3_6B
TS22: integumental system Strong Regionally restricted Embryo_C1181_3_2A
TS22: skin Absent
TS22: hair Strong Regionally restricted Embryo_C1181_3_2A
TS22: vibrissa follicle Strong Regionally restricted Embryo_C1181_3_2A Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory