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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422783
Gene symbol: Pcdh9
Gene name: protocadherin 9
Probe: HD22 probe 15
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen HD22; Specimen C1075: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1075_2_5B
TS22: central nervous system Strong Regionally restricted Embryo_C1075_2_5B
TS22: telencephalon Strong Regionally restricted Embryo_C1075_2_5B
TS22: cerebral cortex Strong Regionally restricted Embryo_C1075_2_5B
TS22: neocortex Moderate Regionally restricted Embryo_C1075_2_5C
TS22: olfactory cortex Strong Regionally restricted Embryo_C1075_2_5B
TS22: main olfactory bulb Strong Regionally restricted Embryo_C1075_2_5B
TS22: piriform cortex Weak Regionally restricted Embryo_C1075_2_2C
TS22: hippocampus Moderate Regionally restricted Embryo_C1075_2_2C
TS22: basal ganglia Weak Regionally restricted Embryo_C1075_2_4B
TS22: corpus striatum Weak Regionally restricted Embryo_C1075_2_2A Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1075_2_5A
TS22: amygdala Weak Regionally restricted Embryo_C1075_2_2B
TS22: telencephalon septum Weak Regionally restricted Embryo_C1075_2_4B
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Moderate Regionally restricted Embryo_C1075_2_3C
TS22: thalamus Moderate Regionally restricted Embryo_C1075_2_3C
TS22: hypothalamus Moderate Regionally restricted Embryo_C1075_2_4A
TS22: midbrain Strong Regionally restricted Embryo_C1075_2_4C
TS22: pretectum Moderate Regionally restricted Embryo_C1075_2_3D
TS22: superior colliculus Weak Regionally restricted Embryo_C1075_2_4B
TS22: inferior colliculus Weak Regionally restricted Embryo_C1075_2_5C
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C1075_2_4C
TS22: hindbrain Strong Regionally restricted Embryo_C1075_2_3C
TS22: cerebellum Strong Regionally restricted Embryo_C1075_2_3B
TS22: pons Strong Regionally restricted Embryo_C1075_2_3A
TS22: medulla oblongata Strong Regionally restricted Embryo_C1075_2_3C
TS22: spinal cord Strong Regionally restricted Embryo_C1075_2_5A
TS22: choroid plexus Weak Regionally restricted Embryo_C1075_2_4C
TS22: meninges Absent
TS22: peripheral nervous system Strong Regionally restricted Embryo_C1075_2_2C
TS22: cranial ganglion Strong Regionally restricted Embryo_C1075_2_2C
TS22: dorsal root ganglion Moderate Scattered Embryo_C1075_2_5A
TS22: eye Strong Regionally restricted Embryo_C1075_2_1C
TS22: retina Strong Regionally restricted Embryo_C1075_2_1C
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C1075_2_5B
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1075_2_5B
TS22: ear Strong Regionally restricted Embryo_C1075_2_2C
TS22: inner ear Strong Regionally restricted Embryo_C1075_2_2C
TS22: cochlea Strong Regionally restricted Embryo_C1075_2_2C
TS22: inner ear labyrinth Absent
TS22: middle ear Weak Regionally restricted Embryo_C1075_2_1A
TS22: alimentary system Moderate Regionally restricted Embryo_C1075_2_4C Expression was detected in the digestive system.
TS22: intestine Absent
TS22: salivary gland Absent
TS22: tongue Weak Regionally restricted Embryo_C1075_2_3C
TS22: tooth Absent
TS22: palatal shelf Moderate Regionally restricted Embryo_C1075_2_4C
TS22: esophagus Weak Regionally restricted Embryo_C1075_2_4A
TS22: stomach Weak Regionally restricted Embryo_C1075_2_3A
TS22: liver Absent
TS22: respiratory system Moderate Regionally restricted Embryo_C1075_2_3A
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_C1075_2_3A
TS22: urinary system Weak Regionally restricted Embryo_C1075_2_5A Expression was weak in the genito-urinary system.
TS22: metanephros Absent
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Weak Regionally restricted Embryo_C1075_2_5A
TS22: genital tubercle Weak Regionally restricted Embryo_C1075_2_5A
TS22: gonad Weak Regionally restricted Embryo_C1075_2_3A
TS22: gland Moderate Regionally restricted Embryo_C1075_2_4B Expression was detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Moderate Regionally restricted Embryo_C1075_2_4B
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Moderate Regionally restricted Embryo_C1075_2_4B Expression was detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C1075_2_2A
TS22: tail Moderate Regionally restricted Embryo_C1075_2_5A
TS22: forelimb Moderate Regionally restricted Embryo_C1075_2_1C
TS22: hindlimb Moderate Regionally restricted Embryo_C1075_2_1C
TS22: integumental system Weak Regionally restricted Embryo_C1075_2_4A
TS22: skin Weak Regionally restricted Embryo_C1075_2_4A
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory