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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422773
Gene symbol: Pitx1
Gene name: paired-like homeodomain transcription factor 1
Probe: DA77 probe 78
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen DA77; Specimen C1270: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Moderate Regionally restricted Embryo_C1270_6_4C
TS22: central nervous system Moderate Regionally restricted Embryo_C1270_6_4D
TS22: telencephalon Weak Regionally restricted Embryo_C1270_6_3A
TS22: cerebral cortex Weak Regionally restricted Embryo_C1270_6_3A
TS22: neocortex Absent
TS22: olfactory cortex Absent
TS22: main olfactory bulb Absent
TS22: piriform cortex Absent
TS22: hippocampus Weak Regionally restricted Embryo_C1270_6_3A
TS22: basal ganglia Weak Regionally restricted Embryo_C1270_6_3A
TS22: corpus striatum Absent Expression was not detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Weak Regionally restricted Embryo_C1270_6_3A
TS22: pallidum Weak Regionally restricted Embryo_C1270_6_3A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1270_6_3A
TS22: thalamus Absent
TS22: hypothalamus Weak Regionally restricted Embryo_C1270_6_4A
TS22: midbrain Moderate Regionally restricted Embryo_C1270_6_4D
TS22: pretectum Absent
TS22: superior colliculus Weak Regionally restricted Embryo_C1270_6_3D
TS22: inferior colliculus Weak Regionally restricted Embryo_C1270_6_3D
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1270_6_4D
TS22: hindbrain Absent
TS22: cerebellum Absent
TS22: pons Absent
TS22: medulla oblongata Absent
TS22: spinal cord Absent
TS22: choroid plexus Weak Regionally restricted Embryo_C1270_6_2B
TS22: meninges Moderate Regionally restricted Embryo_C1270_6_3C
TS22: peripheral nervous system Absent
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Absent
TS22: eye Weak Regionally restricted Embryo_C1270_6_1A
TS22: retina Weak Regionally restricted Embryo_C1270_6_1A
TS22: lens Weak Regionally restricted Embryo_C1270_6_1A
TS22: optic nerve Absent
TS22: nose Moderate Regionally restricted Embryo_C1270_6_4C
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1270_6_4C
TS22: ear Absent
TS22: inner ear Absent
TS22: cochlea Absent
TS22: inner ear labyrinth Absent
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C1270_6_4C Expression was strong in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_C1270_6_4A
TS22: salivary gland Moderate Regionally restricted Embryo_C1270_6_5A
TS22: tongue Strong Regionally restricted Embryo_C1270_6_4C
TS22: tooth Moderate Regionally restricted Embryo_C1270_6_4C
TS22: palatal shelf Moderate Regionally restricted Embryo_C1270_6_3C
TS22: esophagus Strong Regionally restricted Embryo_C1270_6_3D
TS22: stomach Moderate Regionally restricted Embryo_C1270_6_6B
TS22: liver Absent
TS22: respiratory system Weak Regionally restricted Embryo_C1270_6_3C
TS22: pharynx Weak Regionally restricted Embryo_C1270_6_3D
TS22: larynx Weak Regionally restricted Embryo_C1270_6_3C
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Weak Regionally restricted Embryo_C1270_6_1B
TS22: urinary system Strong Regionally restricted Embryo_C1270_6_3C Expression was strong in the genito-urinary system.
TS22: metanephros Absent
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_C1270_6_4A
TS22: urethra Absent
TS22: reproductive system Strong Regionally restricted Embryo_C1270_6_3C
TS22: genital tubercle Strong Regionally restricted Embryo_C1270_6_3C
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C1270_6_4B Expression was detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Moderate Regionally restricted Embryo_C1270_6_4B
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C1270_6_2A
TS22: heart Weak Regionally restricted Embryo_C1270_6_2A
TS22: heart atrium Weak Regionally restricted Embryo_C1270_6_2A
TS22: heart ventricle Weak Regionally restricted Embryo_C1270_6_4A
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1270_6_6B Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Moderate Regionally restricted Embryo_C1270_6_5B Expression was detected in the face/soft tissues.
TS22: facial bone primordium Weak Regionally restricted Embryo_C1270_6_2A
TS22: cranium Moderate Regionally restricted Embryo_C1270_6_3B Expression was detected in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1270_6_2B
TS22: tail Strong Regionally restricted Embryo_C1270_6_3B
TS22: forelimb Strong Regionally restricted Embryo_C1270_6_1B
TS22: hindlimb Strong Regionally restricted Embryo_C1270_6_1B
TS22: integumental system Strong Regionally restricted Embryo_C1270_6_5B
TS22: skin Strong Regionally restricted Embryo_C1270_6_5B
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory