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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422739
Gene symbol: Sema5a
Gene name: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
Probe: MH_QG342
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen ST55; Specimen C1046: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1046_8_4B
TS22: central nervous system Strong Regionally restricted Embryo_C1046_8_4B
TS22: telencephalon Strong Regionally restricted Embryo_C1046_8_2C
TS22: cerebral cortex Strong Regionally restricted Embryo_C1046_8_2C
TS22: neocortex Strong Regionally restricted Embryo_C1046_8_2C
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1046_8_3A
TS22: main olfactory bulb Moderate Regionally restricted Embryo_C1046_8_3A
TS22: piriform cortex Moderate Regionally restricted Embryo_C1046_8_1C
TS22: hippocampus Weak Regionally restricted Embryo_C1046_8_5A
TS22: basal ganglia Moderate Regionally restricted Embryo_C1046_8_1C
TS22: corpus striatum Moderate Regionally restricted Embryo_C1046_8_1C Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Regionally restricted Embryo_C1046_8_1B
TS22: telencephalon septum Weak Regionally restricted Embryo_C1046_8_3C
TS22: pallidum Weak Regionally restricted Embryo_C1046_8_3A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Moderate Regionally restricted Embryo_C1046_8_3B
TS22: thalamus Moderate Regionally restricted Embryo_C1046_8_3B
TS22: hypothalamus Moderate Regionally restricted Embryo_C1046_8_3B
TS22: midbrain Moderate Regionally restricted Embryo_C1046_8_3A
TS22: pretectum Weak Regionally restricted Embryo_C1046_8_3A
TS22: superior colliculus Weak Regionally restricted Embryo_C1046_8_3B
TS22: inferior colliculus Weak Regionally restricted Embryo_C1046_8_3C
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1046_8_3A
TS22: hindbrain Strong Regionally restricted Embryo_C1046_8_4B
TS22: cerebellum Weak Regionally restricted Embryo_C1046_8_4B
TS22: pons Moderate Regionally restricted Embryo_C1046_8_2A
TS22: medulla oblongata Strong Regionally restricted Embryo_C1046_8_4B
TS22: spinal cord Moderate Regionally restricted Embryo_C1046_8_3D
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1046_8_4A
TS22: cranial ganglion Weak Regionally restricted Embryo_C1046_8_5A
TS22: dorsal root ganglion Weak Scattered Embryo_C1046_8_4A
TS22: eye Moderate Regionally restricted Embryo_C1046_8_2C
TS22: retina Weak Regionally restricted Embryo_C1046_8_1A
TS22: lens Weak Regionally restricted Embryo_C1046_8_1A
TS22: optic nerve Moderate Regionally restricted Embryo_C1046_8_2C
TS22: nose Moderate Regionally restricted Embryo_C1046_8_3A
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1046_8_3A
TS22: ear Moderate Regionally restricted Embryo_C1046_8_1B
TS22: inner ear Moderate Regionally restricted Embryo_C1046_8_1B
TS22: cochlea Weak Regionally restricted Embryo_C1046_8_2A
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_C1046_8_1B
TS22: middle ear Moderate Regionally restricted Embryo_C1046_8_1A
TS22: alimentary system Moderate Regionally restricted Embryo_C1046_8_3B Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1046_8_3B
TS22: salivary gland Moderate Regionally restricted Embryo_C1046_8_2C
TS22: tongue Moderate Regionally restricted Embryo_C1046_8_3B
TS22: tooth Moderate Regionally restricted Embryo_C1046_8_3B
TS22: palatal shelf Moderate Regionally restricted Embryo_C1046_8_2D
TS22: esophagus Moderate Regionally restricted Embryo_C1046_8_3A
TS22: stomach Moderate Regionally restricted Embryo_C1046_8_1C
TS22: liver Weak Regionally restricted Embryo_C1046_8_3C
TS22: respiratory system Strong Regionally restricted Embryo_C1046_8_3C
TS22: pharynx Moderate Regionally restricted Embryo_C1046_8_3A
TS22: larynx Strong Regionally restricted Embryo_C1046_8_3C
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Strong Regionally restricted Embryo_C1046_8_4B
TS22: urinary system Strong Regionally restricted Embryo_C1046_8_4B Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C1046_8_4B
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_C1046_8_3A
TS22: urethra Moderate Regionally restricted Embryo_C1046_8_3B
TS22: reproductive system Moderate Regionally restricted Embryo_C1046_8_4B
TS22: genital tubercle Moderate Regionally restricted Embryo_C1046_8_4B
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C1046_8_2B Expression was detected in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Moderate Scattered Embryo_C1046_8_4A
TS22: pancreas Moderate Regionally restricted Embryo_C1046_8_2B
TS22: adrenal gland Absent
TS22: cardiovascular system Moderate Regionally restricted Embryo_C1046_8_2C
TS22: heart Weak Regionally restricted Embryo_C1046_8_3D
TS22: heart atrium Weak Regionally restricted Embryo_C1046_8_3C
TS22: heart ventricle Weak Regionally restricted Embryo_C1046_8_3D
TS22: blood vessel Moderate Regionally restricted Embryo_C1046_8_2C
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C1046_8_1A Expression was detected in the immune system.
TS22: spleen primordium Moderate Regionally restricted Embryo_C1046_8_1A
TS22: thymus primordium Absent
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1046_8_5C Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Strong Regionally restricted Embryo_C1046_8_3B Expression was strong in the face/soft tissues.
TS22: facial bone primordium Weak Regionally restricted Embryo_C1046_8_3D
TS22: cranium Moderate Regionally restricted Embryo_C1046_8_3D Expression was detected in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1046_8_5C
TS22: tail Moderate Regionally restricted Embryo_C1046_8_3A
TS22: forelimb Strong Regionally restricted Embryo_C1046_8_1A
TS22: hindlimb Strong Regionally restricted Embryo_C1046_8_1A
TS22: integumental system Strong Regionally restricted Embryo_C1046_8_1A
TS22: skin Strong Regionally restricted Embryo_C1046_8_1A
TS22: hair Weak Regionally restricted Embryo_C1046_8_1C
TS22: vibrissa follicle Weak Regionally restricted Embryo_C1046_8_1C Expression was weak in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory