About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422725
Gene symbol: Cdh4
Gene name: cadherin 4
Probe: DA101 probe 22
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen DA101; Specimen C1444: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1444_4_3C
TS22: central nervous system Strong Regionally restricted Embryo_C1444_4_3C
TS22: telencephalon Strong Regionally restricted Embryo_C1444_4_2B
TS22: cerebral cortex Strong Regionally restricted Embryo_C1444_4_2B
TS22: neocortex Moderate Regionally restricted Embryo_C1444_4_2B
TS22: olfactory cortex Strong Regionally restricted Embryo_C1444_4_2B
TS22: main olfactory bulb Strong Regionally restricted Embryo_C1444_4_3D
TS22: piriform cortex Strong Regionally restricted Embryo_C1444_4_2B
TS22: hippocampus Strong Regionally restricted Embryo_C1444_4_3B
TS22: basal ganglia Strong Regionally restricted Embryo_C1444_4_2D
TS22: corpus striatum Moderate Regionally restricted Embryo_C1444_4_3B Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Moderate Regionally restricted Embryo_C1444_4_3B
TS22: amygdala Moderate Regionally restricted Embryo_C1444_4_2B
TS22: telencephalon septum Weak Regionally restricted Embryo_C1444_4_3D
TS22: pallidum Strong Regionally restricted Embryo_C1444_4_3D Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_C1444_4_3D
TS22: thalamus Strong Regionally restricted Embryo_C1444_4_4B
TS22: hypothalamus Strong Regionally restricted Embryo_C1444_4_3D
TS22: midbrain Strong Regionally restricted Embryo_C1444_4_3C
TS22: pretectum Moderate Regionally restricted Embryo_C1444_4_3C
TS22: superior colliculus Moderate Regionally restricted Embryo_C1444_4_3C
TS22: inferior colliculus Weak Regionally restricted Embryo_C1444_4_3C
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C1444_4_3C
TS22: hindbrain Strong Regionally restricted Embryo_C1444_4_3C
TS22: cerebellum Strong Regionally restricted Embryo_C1444_4_3C
TS22: pons Strong Regionally restricted Embryo_C1444_4_3C
TS22: medulla oblongata Strong Regionally restricted Embryo_C1444_4_3C
TS22: spinal cord Strong Regionally restricted Embryo_C1444_4_3C
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1444_4_3A
TS22: cranial ganglion Moderate Regionally restricted Embryo_C1444_4_2C
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C1444_4_3A
TS22: eye Moderate Regionally restricted Embryo_C1444_4_1C
TS22: retina Moderate Regionally restricted Embryo_C1444_4_1C
TS22: lens Moderate Regionally restricted Embryo_C1444_4_1C
TS22: cornea Weak Regionally restricted Embryo_C1444_4_1C
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C1444_4_3D
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1444_4_3D
TS22: ear Strong Regionally restricted Embryo_C1444_4_3A
TS22: inner ear Strong Regionally restricted Embryo_C1444_4_3A
TS22: cochlea Strong Regionally restricted Embryo_C1444_4_3A
TS22: inner ear labyrinth Absent
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C1444_4_4D Expression was strong in the digestive system.
TS22: intestine Absent Embryo_C1444_4_3A
TS22: salivary gland Weak Regionally restricted Embryo_C1444_4_3A
TS22: tongue Strong Regionally restricted Embryo_C1444_4_4B
TS22: tooth Absent
TS22: palatal shelf Absent Embryo_C1444_4_4A
TS22: esophagus Weak Regionally restricted Embryo_C1444_4_4B
TS22: stomach Absent
TS22: liver Absent
TS22: respiratory system Moderate Regionally restricted Embryo_C1444_4_3A
TS22: pharynx Absent
TS22: larynx Moderate Regionally restricted Embryo_C1444_4_4D
TS22: trachea Weak Regionally restricted Embryo_C1444_4_4A
TS22: main bronchus Moderate Regionally restricted Embryo_C1444_4_3A
TS22: lung Moderate Regionally restricted Embryo_C1444_4_3A
TS22: urinary system Strong Regionally restricted Embryo_C1444_4_3A Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C1444_4_3A
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_C1444_4_4A
TS22: urethra Weak Regionally restricted Embryo_C1444_4_4A
TS22: reproductive system Strong Regionally restricted Embryo_C1444_4_4C
TS22: genital tubercle Strong Regionally restricted Embryo_C1444_4_4C
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C1444_4_4C Expression was detected in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1444_4_4C
TS22: pituitary gland Weak Regionally restricted Embryo_C1444_4_6B
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C1444_4_4B
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Weak Regionally restricted Embryo_C1444_4_4B
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C1444_4_4B Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Regionally restricted Embryo_C1444_4_4B
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1444_4_1C Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_C1444_4_2A
TS22: face Strong Regionally restricted Embryo_C1444_4_2B Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Strong Regionally restricted Embryo_C1444_4_3C
TS22: tail Moderate Regionally restricted Embryo_C1444_4_4C
TS22: forelimb Strong Regionally restricted Embryo_C1444_4_1A
TS22: hindlimb Strong Regionally restricted Embryo_C1444_4_6B
TS22: integumental system Absent
TS22: skin Absent
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory