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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422665
Gene symbol: Cdh5
Gene name: cadherin 5
Probe: T56073
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen DA97; Specimen C1444: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1444_5_3A
TS22: central nervous system Strong Regionally restricted Embryo_C1444_5_3C
TS22: telencephalon Strong Scattered Embryo_C1444_5_3C
TS22: cerebral cortex Strong Scattered Embryo_C1444_5_3C
TS22: neocortex Strong Scattered Embryo_C1444_5_3C
TS22: olfactory cortex Strong Scattered Embryo_C1444_5_3C
TS22: main olfactory bulb Strong Scattered Embryo_C1444_5_3C
TS22: piriform cortex Strong Scattered Embryo_C1444_5_2A
TS22: hippocampus Strong Scattered Embryo_C1444_5_3C
TS22: basal ganglia Strong Scattered Embryo_C1444_5_3D
TS22: corpus striatum Strong Scattered Embryo_C1444_5_3A Expression was strong in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Strong Scattered Embryo_C1444_5_3C
TS22: amygdala Strong Scattered Embryo_C1444_5_2C
TS22: telencephalon septum Strong Scattered Embryo_C1444_5_3D
TS22: pallidum Moderate Scattered Embryo_C1444_5_3D Expression was detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Scattered Embryo_C1444_5_4A
TS22: thalamus Strong Scattered Embryo_C1444_5_4A
TS22: hypothalamus Strong Scattered Embryo_C1444_5_4A
TS22: midbrain Strong Scattered Embryo_C1444_5_4A
TS22: pretectum Strong Scattered Embryo_C1444_5_4A
TS22: superior colliculus Moderate Scattered Embryo_C1444_5_4B
TS22: inferior colliculus Moderate Scattered Embryo_C1444_5_4B
TS22: midbrain tegmentum Strong Scattered Embryo_C1444_5_4A
TS22: hindbrain Strong Scattered Embryo_C1444_5_4B
TS22: cerebellum Strong Scattered Embryo_C1444_5_3B
TS22: pons Strong Scattered Embryo_C1444_5_4B
TS22: medulla oblongata Strong Scattered Embryo_C1444_5_4B
TS22: spinal cord Strong Scattered Embryo_C1444_5_4B
TS22: choroid plexus Strong Regionally restricted Embryo_C1444_5_4B
TS22: meninges Strong Regionally restricted Embryo_C1444_5_4B
TS22: peripheral nervous system Strong Scattered Embryo_C1444_5_3A
TS22: cranial ganglion Strong Scattered Embryo_C1444_5_2B
TS22: dorsal root ganglion Strong Scattered Embryo_C1444_5_3A
TS22: eye Strong Regionally restricted Embryo_C1444_5_2A
TS22: retina Strong Scattered Embryo_C1444_5_2A
TS22: lens Absent
TS22: optic nerve Absent
TS22: nose Absent
TS22: olfactory epithelium Absent
TS22: ear Strong Regionally restricted Embryo_C1444_5_2D
TS22: inner ear Strong Regionally restricted Embryo_C1444_5_2D
TS22: cochlea Strong Regionally restricted Embryo_C1444_5_2D
TS22: inner ear labyrinth Strong Regionally restricted Embryo_C1444_5_2A
TS22: middle ear Strong Scattered Embryo_C1444_5_1B
TS22: alimentary system Strong Regionally restricted Embryo_C1444_5_3A Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C1444_5_3A
TS22: salivary gland Strong Scattered Embryo_C1444_5_3A
TS22: tongue Strong Scattered Embryo_C1444_5_4D
TS22: tooth Absent
TS22: palatal shelf Strong Regionally restricted Embryo_C1444_5_4B
TS22: esophagus Strong Regionally restricted Embryo_C1444_5_4B
TS22: stomach Strong Regionally restricted Embryo_C1444_5_6C
TS22: liver Moderate Scattered Embryo_C1444_5_6C
TS22: respiratory system Strong Regionally restricted Embryo_C1444_5_6A
TS22: pharynx Strong Regionally restricted Embryo_C1444_5_4C
TS22: larynx Strong Regionally restricted Embryo_C1444_5_4C
TS22: trachea Absent
TS22: lung Strong Regionally restricted Embryo_C1444_5_6A
TS22: urinary system Strong Regionally restricted Embryo_C1444_5_5B Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C1444_5_5B
TS22: ureter Absent Embryo_C1444_5_4A
TS22: bladder Strong Regionally restricted Embryo_C1444_5_4A
TS22: urethra Absent Embryo_C1444_5_4A
TS22: reproductive system Strong Regionally restricted Embryo_C1444_5_6B
TS22: genital tubercle Strong Regionally restricted Embryo_C1444_5_4A
TS22: gonad Strong Scattered Embryo_C1444_5_6B
TS22: gland Strong Regionally restricted Embryo_C1444_5_5B Expression was strong in the endocrine system.
TS22: thyroid gland Strong Scattered Embryo_C1444_5_4C
TS22: pituitary gland Strong Scattered Embryo_C1444_5_4B
TS22: pancreas Strong Scattered Embryo_C1444_5_5B
TS22: adrenal gland Strong Regionally restricted Embryo_C1444_5_5B
TS22: cardiovascular system Strong Regionally restricted Embryo_C1444_5_4B
TS22: heart Strong Regionally restricted Embryo_C1444_5_4B
TS22: heart atrium Strong Regionally restricted Embryo_C1444_5_4B
TS22: heart ventricle Strong Scattered Embryo_C1444_5_4B
TS22: blood vessel Strong Regionally restricted Embryo_C1444_5_4B
TS22: hemolymphoid system Strong Regionally restricted Embryo_C1444_5_6B Expression was strong in the immune system.
TS22: spleen primordium Strong Regionally restricted Embryo_C1444_5_6B
TS22: thymus primordium Strong Scattered Embryo_C1444_5_3C
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Strong Scattered Embryo_C1444_5_1D
TS22: face Strong Regionally restricted Embryo_C1444_5_3D Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Strong Scattered Embryo_C1444_5_3A
TS22: forelimb Strong Scattered Embryo_C1444_5_1A
TS22: hindlimb Strong Scattered Embryo_C1444_5_2A
TS22: integumental system Strong Regionally restricted Embryo_C1444_5_2C
TS22: skin Strong Regionally restricted Embryo_C1444_5_2C
TS22: hair Moderate Regionally restricted Embryo_C1444_5_2A
TS22: vibrissa follicle Moderate Regionally restricted Embryo_C1444_5_2A Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory