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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422523
Gene symbol: Arid1a
Gene name: AT-rich interaction domain 1A
Probe: T55005
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH3059; Specimen C4187: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C4187_6_4B
TS22: central nervous system Strong Regionally restricted Embryo_C4187_6_4B
TS22: telencephalon Moderate Regionally restricted Embryo_C4187_6_3A
TS22: cerebral cortex Moderate Regionally restricted Embryo_C4187_6_3A
TS22: neocortex Moderate Regionally restricted Embryo_C4187_6_3A
TS22: olfactory cortex Moderate Regionally restricted Embryo_C4187_6_2A
TS22: main olfactory bulb Weak Regionally restricted Embryo_C4187_6_3C
TS22: piriform cortex Moderate Regionally restricted Embryo_C4187_6_2A
TS22: hippocampus Moderate Regionally restricted Embryo_C4187_6_3A
TS22: basal ganglia Weak Regionally restricted Embryo_C4187_6_3A
TS22: corpus striatum Weak Ubiquitous Embryo_C4187_6_2A Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Ubiquitous Embryo_C4187_6_2A
TS22: telencephalon septum Weak Regionally restricted Embryo_C4187_6_3A
TS22: pallidum Weak Regionally restricted Embryo_C4187_6_3A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C4187_6_3A
TS22: thalamus Weak Regionally restricted Embryo_C4187_6_3A
TS22: hypothalamus Weak Regionally restricted Embryo_C4187_6_4A
TS22: midbrain Strong Regionally restricted Embryo_C4187_6_3C
TS22: pretectum Absent
TS22: superior colliculus Moderate Regionally restricted Embryo_C4187_6_4B
TS22: inferior colliculus Strong Regionally restricted Embryo_C4187_6_4B
TS22: midbrain tegmentum Weak Regionally restricted Embryo_C4187_6_3C
TS22: hindbrain Moderate Regionally restricted Embryo_C4187_6_4A
TS22: cerebellum Moderate Regionally restricted Embryo_C4187_6_4A
TS22: pons Moderate Regionally restricted Embryo_C4187_6_4A
TS22: medulla oblongata Weak Regionally restricted Embryo_C4187_6_4A
TS22: spinal cord Weak Regionally restricted Embryo_C4187_6_4A
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Weak Ubiquitous Embryo_C4187_6_2A
TS22: cranial ganglion Weak Ubiquitous Embryo_C4187_6_2A
TS22: dorsal root ganglion Weak Ubiquitous Embryo_C4187_6_5B
TS22: eye Moderate Regionally restricted Embryo_C4187_6_1A
TS22: retina Moderate Regionally restricted Embryo_C4187_6_1A
TS22: lens Moderate Regionally restricted Embryo_C4187_6_1A
TS22: cornea Absent
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C4187_6_3A
TS22: olfactory epithelium Weak Regionally restricted Embryo_C4187_6_3A
TS22: ear Moderate Regionally restricted Embryo_C4187_6_3A
TS22: inner ear Moderate Regionally restricted Embryo_C4187_6_3A
TS22: cochlea Moderate Regionally restricted Embryo_C4187_6_3A
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C4187_6_2C
TS22: middle ear Weak Regionally restricted Embryo_C4187_6_1A
TS22: alimentary system Moderate Regionally restricted Embryo_C4187_6_4A Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C4187_6_3A
TS22: salivary gland Moderate Regionally restricted Embryo_C4187_6_2C
TS22: tongue Weak Regionally restricted Embryo_C4187_6_4A
TS22: tooth Moderate Regionally restricted Embryo_C4187_6_4A
TS22: palatal shelf Absent
TS22: esophagus Weak Regionally restricted Embryo_C4187_6_4A
TS22: stomach Absent
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_C4187_6_3A
TS22: pharynx Weak Regionally restricted Embryo_C4187_6_4A
TS22: larynx Weak Regionally restricted Embryo_C4187_6_4A
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Strong Regionally restricted Embryo_C4187_6_3A
TS22: urinary system Moderate Regionally restricted Embryo_C4187_6_3A Expression was detected in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted Embryo_C4187_6_3A
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Weak Regionally restricted Embryo_C4187_6_4B
TS22: genital tubercle Weak Regionally restricted Embryo_C4187_6_4B
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_C4187_6_4A Expression was weak in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Weak Regionally restricted Embryo_C4187_6_4A
TS22: pancreas Weak Regionally restricted Embryo_C4187_6_3C
TS22: adrenal gland Absent
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C4187_6_4A Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Regionally restricted Embryo_C4187_6_4A
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Weak Regionally restricted Embryo_C4187_6_4B
TS22: forelimb Weak Regionally restricted Embryo_C4187_6_1A
TS22: hindlimb Weak Regionally restricted Embryo_C4187_6_1A
TS22: integumental system Weak Regionally restricted Embryo_C4187_6_2A
TS22: skin Weak Regionally restricted Embryo_C4187_6_1A
TS22: hair Weak Regionally restricted Embryo_C4187_6_2A
TS22: vibrissa follicle Weak Regionally restricted Embryo_C4187_6_2A Expression was weak in whisker follicle.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory