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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422399
Gene symbol: Ascl2
Gene name: achaete-scute family bHLH transcription factor 2
Probe: T50003
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen DA78; Specimen C1270: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Moderate Regionally restricted Embryo_C1270_5_4A
TS22: central nervous system Moderate Regionally restricted Embryo_C1270_5_4A
TS22: telencephalon Moderate Regionally restricted Embryo_C1270_5_5A
TS22: cerebral cortex Moderate Regionally restricted Embryo_C1270_5_5A
TS22: neocortex Moderate Regionally restricted Embryo_C1270_5_5A
TS22: olfactory cortex Absent
TS22: main olfactory bulb Absent
TS22: piriform cortex Absent
TS22: hippocampus Moderate Regionally restricted Embryo_C1270_5_5A
TS22: basal ganglia Moderate Regionally restricted Embryo_C1270_5_5A
TS22: corpus striatum Moderate Regionally restricted Embryo_C1270_5_5A Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Regionally restricted Embryo_C1270_5_6A
TS22: telencephalon septum Weak Regionally restricted Embryo_C1270_5_4A
TS22: pallidum Weak Regionally restricted Embryo_C1270_5_5A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1270_5_4A
TS22: thalamus Weak Regionally restricted Embryo_C1270_5_4A
TS22: hypothalamus Weak Regionally restricted Embryo_C1270_5_4A
TS22: midbrain Moderate Regionally restricted Embryo_C1270_5_4A
TS22: pretectum Weak Regionally restricted Embryo_C1270_5_4A
TS22: superior colliculus Moderate Regionally restricted Embryo_C1270_5_4A
TS22: inferior colliculus Moderate Regionally restricted Embryo_C1270_5_4A
TS22: midbrain tegmentum Weak Regionally restricted Embryo_C1270_5_4A
TS22: hindbrain Weak Regionally restricted Embryo_C1270_5_3D
TS22: cerebellum Weak Regionally restricted Embryo_C1270_5_3D
TS22: pons Absent
TS22: medulla oblongata Absent
TS22: spinal cord Weak Regionally restricted Embryo_C1270_5_3B
TS22: choroid plexus Absent
TS22: meninges Weak Regionally restricted Embryo_C1270_5_6A
TS22: peripheral nervous system Absent
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Absent
TS22: eye Absent
TS22: retina Absent
TS22: lens Absent
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C1270_5_5A
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1270_5_5A
TS22: ear Moderate Regionally restricted Embryo_C1270_5_3A
TS22: inner ear Moderate Regionally restricted Embryo_C1270_5_3A
TS22: cochlea Moderate Regionally restricted Embryo_C1270_5_3A
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C1270_5_1D
TS22: middle ear Weak Regionally restricted Embryo_C1270_5_1A
TS22: alimentary system Strong Regionally restricted Embryo_C1270_5_4A Expression was strong in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1270_5_3A
TS22: salivary gland Weak Regionally restricted Embryo_C1270_5_2B
TS22: tongue Strong Regionally restricted Embryo_C1270_5_4A
TS22: tooth Weak Regionally restricted Embryo_C1270_5_3B
TS22: palatal shelf Absent
TS22: esophagus Absent
TS22: stomach Weak Regionally restricted Embryo_C1270_5_6A
TS22: liver Weak Regionally restricted Embryo_C1270_5_6C
TS22: respiratory system Weak Regionally restricted Embryo_C1270_5_5A
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Weak Regionally restricted Embryo_C1270_5_5A
TS22: urinary system Strong Regionally restricted Embryo_C1270_5_4A Expression was strong in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1270_5_5A
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Weak Regionally restricted Embryo_C1270_5_3C
TS22: reproductive system Strong Regionally restricted Embryo_C1270_5_4A
TS22: genital tubercle Strong Regionally restricted Embryo_C1270_5_4A
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_C1270_5_4D Expression was weak in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Weak Regionally restricted Embryo_C1270_5_3B
TS22: pancreas Weak Regionally restricted Embryo_C1270_5_4D
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C1270_5_4B
TS22: heart Weak Regionally restricted Embryo_C1270_5_4B
TS22: heart atrium Weak Regionally restricted Embryo_C1270_5_4B
TS22: heart ventricle Weak Regionally restricted Embryo_C1270_5_4A
TS22: blood vessel Weak Regionally restricted Embryo_C1270_5_3A
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Moderate Regionally restricted Embryo_C1270_5_6B Expression was detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Moderate Regionally restricted Embryo_C1270_5_4B Expression was detected in the face/soft tissues.
TS22: facial bone primordium Moderate Regionally restricted Embryo_C1270_5_3A
TS22: cranium Moderate Regionally restricted Embryo_C1270_5_3B Expression was detected in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1270_5_2B
TS22: tail Strong Regionally restricted Embryo_C1270_5_4A
TS22: forelimb Strong Regionally restricted Embryo_C1270_5_1A
TS22: hindlimb Strong Regionally restricted Embryo_C1270_5_1A
TS22: integumental system Strong Regionally restricted Embryo_C1270_5_1A
TS22: skin Strong Regionally restricted Embryo_C1270_5_1A
TS22: hair Weak Regionally restricted Embryo_C1270_5_1D
TS22: vibrissa follicle Weak Regionally restricted Embryo_C1270_5_1D Expression was weak in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory