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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421804
Gene symbol: Cox6b1
Gene name: cytochrome c oxidase, subunit 6B1
Probe: T30267
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen EG1743; Specimen G0529: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_G0529_1_3B
TS22: central nervous system Moderate Regionally restricted Embryo_G0529_1_4A
TS22: telencephalon Moderate Regionally restricted Embryo_G0529_1_4A
TS22: cerebral cortex Moderate Regionally restricted Embryo_G0529_1_4A
TS22: neocortex Moderate Ubiquitous Embryo_G0529_1_4A
TS22: olfactory cortex Moderate Regionally restricted Embryo_G0529_1_3C
TS22: main olfactory bulb Moderate Regionally restricted Embryo_G0529_1_3C
TS22: piriform cortex Absent
TS22: hippocampus Moderate Ubiquitous Embryo_G0529_1_4A
TS22: basal ganglia Absent
TS22: corpus striatum Absent Expression was not detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Absent
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Ubiquitous Embryo_G0529_1_4A
TS22: thalamus Weak Ubiquitous Embryo_G0529_1_4A
TS22: hypothalamus Weak Ubiquitous Embryo_G0529_1_4A
TS22: midbrain Moderate Regionally restricted Embryo_G0529_1_4B
TS22: pretectum Absent
TS22: superior colliculus Weak Regionally restricted Embryo_G0529_1_4B
TS22: inferior colliculus Moderate Ubiquitous Embryo_G0529_1_4B
TS22: midbrain tegmentum Weak Regionally restricted Embryo_G0529_1_4B
TS22: hindbrain Weak Regionally restricted Embryo_G0529_1_3D
TS22: cerebellum Weak Regionally restricted Embryo_G0529_1_3D
TS22: pons Weak Regionally restricted Embryo_G0529_1_3D
TS22: medulla oblongata Weak Regionally restricted Embryo_G0529_1_3D
TS22: spinal cord Moderate Regionally restricted Embryo_G0529_1_4A
TS22: choroid plexus Moderate Regionally restricted Embryo_G0529_1_4B
TS22: meninges Absent
TS22: peripheral nervous system Strong Regionally restricted Embryo_G0529_1_3B
TS22: cranial ganglion Strong Regionally restricted Embryo_G0529_1_5D
TS22: dorsal root ganglion Strong Ubiquitous Embryo_G0529_1_4C
TS22: eye Moderate Regionally restricted Embryo_G0529_1_1C
TS22: retina Moderate Ubiquitous Embryo_G0529_1_1C
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Weak Regionally restricted Embryo_G0529_1_5D
TS22: nose Weak Regionally restricted Embryo_G0529_1_3B
TS22: olfactory epithelium Weak Regionally restricted Embryo_G0529_1_3B
TS22: ear Weak Regionally restricted Embryo_G0529_1_1B
TS22: inner ear Weak Regionally restricted Embryo_G0529_1_1B
TS22: cochlea Weak Regionally restricted Embryo_G0529_1_2D
TS22: inner ear labyrinth Absent
TS22: middle ear Weak Regionally restricted Embryo_G0529_1_1B
TS22: alimentary system Moderate Regionally restricted Embryo_G0529_1_1B Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_G0529_1_5C
TS22: salivary gland Moderate Regionally restricted Embryo_G0529_1_2C
TS22: tongue Absent
TS22: tooth Moderate Regionally restricted Embryo_G0529_1_4C
TS22: palatal shelf Absent
TS22: esophagus Absent
TS22: stomach Absent
TS22: liver Moderate Ubiquitous Embryo_G0529_1_1B
TS22: respiratory system Weak Regionally restricted Embryo_G0529_1_3D
TS22: pharynx Weak Regionally restricted Embryo_G0529_1_3D
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Weak Regionally restricted Embryo_G0529_1_3B
TS22: lung Weak Regionally restricted Embryo_G0529_1_2C
TS22: urinary system Weak Regionally restricted Embryo_G0529_1_2C Expression was weak in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_G0529_1_2C
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Absent
TS22: genital tubercle Absent
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_G0529_1_3B Expression was weak in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_G0529_1_3B
TS22: pituitary gland Absent
TS22: pancreas Weak Regionally restricted Embryo_G0529_1_3B
TS22: adrenal gland Weak Ubiquitous Embryo_G0529_1_2D
TS22: cardiovascular system Moderate Regionally restricted Embryo_G0529_1_3C
TS22: heart Moderate Regionally restricted Embryo_G0529_1_3C
TS22: heart atrium Weak Regionally restricted Embryo_G0529_1_4A
TS22: heart ventricle Moderate Regionally restricted Embryo_G0529_1_3C
TS22: blood vessel Absent
TS22: hemolymphoid system Moderate Regionally restricted Embryo_G0529_1_3C Expression was detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Moderate Ubiquitous Embryo_G0529_1_3C
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_G0529_1_1B
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Weak Regionally restricted Embryo_G0529_1_4C
TS22: forelimb Absent
TS22: hindlimb Absent
TS22: integumental system Weak Regionally restricted Embryo_G0529_1_6A
TS22: skin Absent
TS22: hair Weak Regionally restricted Embryo_G0529_1_6A
TS22: vibrissa follicle Weak Regionally restricted Embryo_G0529_1_6A Expression was weak in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory