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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421738
Gene symbol: Fgf9
Gene name: fibroblast growth factor 9
Probe: T_FG6_AH008071
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen FG52; Specimen Ex212: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_Ex212_3_6C
TS22: central nervous system Strong Regionally restricted Embryo_Ex212_3_2C
TS22: telencephalon Moderate Regionally restricted Embryo_Ex212_3_3C
TS22: cerebral cortex Moderate Regionally restricted Embryo_Ex212_3_3C
TS22: neocortex Absent
TS22: olfactory cortex Moderate Regionally restricted Embryo_Ex212_3_3C
TS22: main olfactory bulb Moderate Regionally restricted Embryo_Ex212_3_3C
TS22: piriform cortex Weak Regionally restricted Embryo_Ex212_3_1C
TS22: hippocampus Absent
TS22: basal ganglia Weak Regionally restricted Embryo_Ex212_3_6C
TS22: corpus striatum Absent Expression was not detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Regionally restricted Embryo_Ex212_3_6C
TS22: telencephalon septum Absent
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Absent
TS22: thalamus Absent
TS22: hypothalamus Absent
TS22: midbrain Weak Regionally restricted Embryo_Ex212_3_4A
TS22: pretectum Absent
TS22: superior colliculus Absent
TS22: inferior colliculus Absent
TS22: midbrain tegmentum Weak Regionally restricted Embryo_Ex212_3_4A
TS22: hindbrain Strong Regionally restricted Embryo_Ex212_3_2C
TS22: cerebellum Absent
TS22: pons Strong Regionally restricted Embryo_Ex212_3_2C
TS22: medulla oblongata Weak Regionally restricted Embryo_Ex212_3_4A
TS22: spinal cord Moderate Regionally restricted Embryo_Ex212_3_4A
TS22: choroid plexus Weak Regionally restricted Embryo_Ex212_3_3D
TS22: meninges Weak Regionally restricted Embryo_Ex212_3_4A
TS22: peripheral nervous system Weak Regionally restricted Embryo_Ex212_3_3A
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Weak Regionally restricted Embryo_Ex212_3_3A
TS22: eye Moderate Regionally restricted Embryo_Ex212_3_1B
TS22: retina Moderate Regionally restricted Embryo_Ex212_3_1B
TS22: lens Absent
TS22: cornea Moderate Regionally restricted Embryo_Ex212_3_1A
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_Ex212_3_4B
TS22: olfactory epithelium Weak Regionally restricted Embryo_Ex212_3_4B
TS22: ear Strong Regionally restricted Embryo_Ex212_3_6C
TS22: inner ear Strong Regionally restricted Embryo_Ex212_3_6C
TS22: cochlea Moderate Regionally restricted Embryo_Ex212_3_2C
TS22: inner ear labyrinth Strong Regionally restricted Embryo_Ex212_3_6C
TS22: middle ear Weak Regionally restricted Embryo_Ex212_3_6B
TS22: alimentary system Moderate Regionally restricted Embryo_Ex212_3_3D Expression was detected in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_Ex212_3_3D
TS22: salivary gland Weak Regionally restricted Embryo_Ex212_3_5A
TS22: tongue Weak Regionally restricted Embryo_Ex212_3_4A
TS22: tooth Moderate Regionally restricted Embryo_Ex212_3_4C
TS22: palatal shelf Moderate Regionally restricted Embryo_Ex212_3_4D
TS22: esophagus Weak Regionally restricted Embryo_Ex212_3_3D
TS22: stomach Weak Regionally restricted Embryo_Ex212_3_1C
TS22: liver Weak Regionally restricted Embryo_Ex212_3_3B
TS22: respiratory system Moderate Regionally restricted Embryo_Ex212_3_4C
TS22: pharynx Absent
TS22: larynx Weak Regionally restricted Embryo_Ex212_3_4A
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_Ex212_3_4C
TS22: urinary system Moderate Regionally restricted Embryo_Ex212_3_4B Expression was detected in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_Ex212_3_2B
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_Ex212_3_3C
TS22: urethra Weak Regionally restricted Embryo_Ex212_3_3D
TS22: reproductive system Moderate Regionally restricted Embryo_Ex212_3_4B
TS22: genital tubercle Moderate Regionally restricted Embryo_Ex212_3_4B
TS22: gonad Weak Regionally restricted Embryo_Ex212_3_2B
TS22: gland Weak Ubiquitous Embryo_Ex212_3_3D Expression was weak in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Weak Ubiquitous Embryo_Ex212_3_3D
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Moderate Regionally restricted Embryo_Ex212_3_4A
TS22: heart Moderate Regionally restricted Embryo_Ex212_3_4A
TS22: heart atrium Weak Regionally restricted Embryo_Ex212_3_4B
TS22: heart ventricle Moderate Regionally restricted Embryo_Ex212_3_4A
TS22: blood vessel Moderate Regionally restricted Embryo_Ex212_3_4B
TS22: hemolymphoid system Weak Regionally restricted Embryo_Ex212_3_1C Expression was weak in the immune system.
TS22: spleen primordium Weak Regionally restricted Embryo_Ex212_3_1C
TS22: thymus primordium Absent
TS22: appendicular skeleton Moderate Regionally restricted Embryo_Ex212_3_6A Expression was detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_Ex212_3_1B
TS22: face Strong Regionally restricted Embryo_Ex212_3_4C Expression was strong in the face/soft tissues.
TS22: facial bone primordium Moderate Regionally restricted Embryo_Ex212_3_3B
TS22: cranium Weak Regionally restricted Embryo_Ex212_3_4B Expression was weak in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_Ex212_3_5B
TS22: tail Strong Regionally restricted Embryo_Ex212_3_4B
TS22: forelimb Strong Regionally restricted Embryo_Ex212_3_1A
TS22: hindlimb Strong Regionally restricted Embryo_Ex212_3_6A
TS22: integumental system Strong Regionally restricted Embryo_Ex212_3_6A
TS22: skin Strong Regionally restricted Embryo_Ex212_3_1A
TS22: hair Strong Regionally restricted Embryo_Ex212_3_6A
TS22: vibrissa follicle Strong Regionally restricted Embryo_Ex212_3_6A Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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01/28/2026
MGI 6.24 		The Jackson Laboratory