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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421584
Gene symbol: Smpd2
Gene name: sphingomyelin phosphodiesterase 2, neutral
Probe: MH1539 probe 1248
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH1539; Specimen C1540: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Moderate Regionally restricted Embryo_C1540_2_5B
TS22: central nervous system Moderate Regionally restricted Embryo_C1540_2_5B
TS22: telencephalon Moderate Regionally restricted Embryo_C1540_2_5B
TS22: cerebral cortex Moderate Regionally restricted Embryo_C1540_2_5B
TS22: neocortex Moderate Regionally restricted Embryo_C1540_2_5B
TS22: olfactory cortex Weak Regionally restricted Embryo_C1540_2_5A
TS22: main olfactory bulb Weak Regionally restricted Embryo_C1540_2_5A
TS22: piriform cortex Absent
TS22: hippocampus Moderate Regionally restricted Embryo_C1540_2_6B
TS22: basal ganglia Weak Regionally restricted Embryo_C1540_2_5A
TS22: corpus striatum Weak Regionally restricted Embryo_C1540_2_5B Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1540_2_5A
TS22: amygdala Weak Regionally restricted Embryo_C1540_2_2A
TS22: telencephalon septum Weak Regionally restricted Embryo_C1540_2_5A
TS22: pallidum Weak Regionally restricted Embryo_C1540_2_5A Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1540_2_4A
TS22: thalamus Weak Regionally restricted Embryo_C1540_2_4A
TS22: hypothalamus Weak Regionally restricted Embryo_C1540_2_4B
TS22: midbrain Weak Regionally restricted Embryo_C1540_2_4A
TS22: pretectum Weak Regionally restricted Embryo_C1540_2_4A
TS22: superior colliculus Weak Regionally restricted Embryo_C1540_2_4A
TS22: inferior colliculus Weak Regionally restricted Embryo_C1540_2_4B
TS22: midbrain tegmentum Weak Regionally restricted Embryo_C1540_2_4A
TS22: hindbrain Weak Regionally restricted Embryo_C1540_2_4A
TS22: cerebellum Weak Regionally restricted Embryo_C1540_2_5A
TS22: pons Weak Regionally restricted Embryo_C1540_2_4A
TS22: medulla oblongata Weak Regionally restricted Embryo_C1540_2_4A
TS22: spinal cord Moderate Regionally restricted Embryo_C1540_2_3C
TS22: choroid plexus Weak Regionally restricted Embryo_C1540_2_5A
TS22: meninges Weak Regionally restricted Embryo_C1540_2_1A
TS22: peripheral nervous system Absent
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Absent
TS22: eye Weak Regionally restricted Embryo_C1540_2_1A
TS22: retina Weak Regionally restricted Embryo_C1540_2_1A
TS22: lens Weak Regionally restricted Embryo_C1540_2_1A
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C1540_2_2D
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1540_2_2D
TS22: ear Weak Regionally restricted Embryo_C1540_2_1A
TS22: inner ear Weak Regionally restricted Embryo_C1540_2_5A
TS22: cochlea Weak Regionally restricted Embryo_C1540_2_5A
TS22: inner ear labyrinth Absent
TS22: middle ear Weak Regionally restricted Embryo_C1540_2_1A
TS22: alimentary system Strong Regionally restricted Embryo_C1540_2_2D Expression was strong in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1540_2_4A
TS22: salivary gland Weak Regionally restricted Embryo_C1540_2_5B
TS22: tongue Strong Scattered Embryo_C1540_2_4C
TS22: tooth Absent
TS22: palatal shelf Strong Scattered Embryo_C1540_2_4B
TS22: esophagus Weak Regionally restricted Embryo_C1540_2_3D
TS22: stomach Strong Scattered Embryo_C1540_2_5D
TS22: liver Strong Scattered Embryo_C1540_2_2D
TS22: respiratory system Strong Regionally restricted Embryo_C1540_2_2D
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Strong Regionally restricted Embryo_C1540_2_2D
TS22: urinary system Strong Regionally restricted Embryo_C1540_2_4D Expression was strong in the genito-urinary system.
TS22: metanephros Moderate Scattered Embryo_C1540_2_5A
TS22: ureter Weak Regionally restricted Embryo_C1540_2_4A
TS22: bladder Absent
TS22: urethra Weak Regionally restricted Embryo_C1540_2_4A
TS22: reproductive system Strong Regionally restricted Embryo_C1540_2_4D
TS22: genital tubercle Strong Scattered Embryo_C1540_2_4D
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C1540_2_5A Expression was detected in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_C1540_2_3A
TS22: pituitary gland Weak Regionally restricted Embryo_C1540_2_4A
TS22: pancreas Moderate Scattered Embryo_C1540_2_5A
TS22: adrenal gland Absent
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Strong Regionally restricted Embryo_C1540_2_6B Expression was strong in the immune system.
TS22: spleen primordium Strong Scattered Embryo_C1540_2_6B
TS22: thymus primordium Weak Regionally restricted Embryo_C1540_2_3A
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1540_2_4C Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Strong Scattered Embryo_C1540_2_2C Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C1540_2_5A
TS22: tail Strong Scattered Embryo_C1540_2_4A
TS22: forelimb Strong Scattered Embryo_C1540_2_6D
TS22: hindlimb Strong Scattered Embryo_C1540_2_2A
TS22: integumental system Weak Regionally restricted Embryo_C1540_2_5A
TS22: skin Weak Regionally restricted Embryo_C1540_2_5A
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory