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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421520
Gene symbol: Hadha
Gene name: hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha
Probe: MH1459 probe 1169
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH1459; Specimen C1514: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1514_4_4C
TS22: central nervous system Strong Regionally restricted Embryo_C1514_4_4C
TS22: telencephalon Moderate Regionally restricted Embryo_C1514_4_2C
TS22: cerebral cortex Moderate Regionally restricted Embryo_C1514_4_2C
TS22: neocortex Moderate Regionally restricted Embryo_C1514_4_5A
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1514_4_3D
TS22: main olfactory bulb Moderate Regionally restricted Embryo_C1514_4_3D
TS22: piriform cortex Weak Regionally restricted Embryo_C1514_4_2D
TS22: hippocampus Moderate Regionally restricted Embryo_C1514_4_2C
TS22: basal ganglia Moderate Regionally restricted Embryo_C1514_4_2D
TS22: corpus striatum Moderate Regionally restricted Embryo_C1514_4_2D Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1514_4_3C
TS22: amygdala Weak Regionally restricted Embryo_C1514_4_2A
TS22: telencephalon septum Weak Regionally restricted Embryo_C1514_4_4C
TS22: pallidum Weak Regionally restricted Embryo_C1514_4_3D Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1514_4_4B
TS22: thalamus Weak Regionally restricted Embryo_C1514_4_4B
TS22: hypothalamus Weak Regionally restricted Embryo_C1514_4_4B
TS22: midbrain Moderate Regionally restricted Embryo_C1514_4_3C
TS22: pretectum Moderate Regionally restricted Embryo_C1514_4_4B
TS22: superior colliculus Moderate Regionally restricted Embryo_C1514_4_4B
TS22: inferior colliculus Moderate Regionally restricted Embryo_C1514_4_3C
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1514_4_3C
TS22: hindbrain Moderate Regionally restricted Embryo_C1514_4_4C
TS22: cerebellum Weak Regionally restricted Embryo_C1514_4_4B
TS22: pons Moderate Regionally restricted Embryo_C1514_4_4C
TS22: medulla oblongata Moderate Regionally restricted Embryo_C1514_4_4C
TS22: spinal cord Moderate Regionally restricted Embryo_C1514_4_3D
TS22: choroid plexus Strong Regionally restricted Embryo_C1514_4_4C
TS22: meninges Moderate Regionally restricted Embryo_C1514_4_1D
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1514_4_3B
TS22: cranial ganglion Moderate Regionally restricted Embryo_C1514_4_3B
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C1514_4_3B
TS22: eye Moderate Regionally restricted Embryo_C1514_4_1B
TS22: retina Moderate Regionally restricted Embryo_C1514_4_1B
TS22: lens Moderate Regionally restricted Embryo_C1514_4_1A
TS22: cornea Absent
TS22: optic nerve Weak Regionally restricted Embryo_C1514_4_3A
TS22: nose Moderate Regionally restricted Embryo_C1514_4_5A
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1514_4_5A
TS22: ear Moderate Regionally restricted Embryo_C1514_4_3B
TS22: inner ear Moderate Regionally restricted Embryo_C1514_4_3B
TS22: cochlea Moderate Regionally restricted Embryo_C1514_4_3B
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_C1514_4_2B
TS22: middle ear Moderate Regionally restricted Embryo_C1514_4_1B
TS22: alimentary system Moderate Regionally restricted Embryo_C1514_4_4A Expression was detected in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_C1514_4_4A
TS22: salivary gland Moderate Regionally restricted Embryo_C1514_4_3B
TS22: tongue Moderate Regionally restricted Embryo_C1514_4_5A
TS22: tooth Weak Regionally restricted Embryo_C1514_4_5C
TS22: palatal shelf Moderate Regionally restricted Embryo_C1514_4_4A
TS22: esophagus Moderate Regionally restricted Embryo_C1514_4_4C
TS22: stomach Moderate Regionally restricted Embryo_C1514_4_6B
TS22: liver Moderate Regionally restricted Embryo_C1514_4_3A
TS22: respiratory system Moderate Regionally restricted Embryo_C1514_4_4B
TS22: pharynx Moderate Regionally restricted Embryo_C1514_4_4D
TS22: larynx Moderate Regionally restricted Embryo_C1514_4_4C
TS22: trachea Moderate Regionally restricted Embryo_C1514_4_4B
TS22: main bronchus Moderate Regionally restricted Embryo_C1514_4_5A
TS22: lung Moderate Regionally restricted Embryo_C1514_4_5B
TS22: urinary system Moderate Regionally restricted Embryo_C1514_4_3B Expression was detected in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted Embryo_C1514_4_5A
TS22: ureter Absent
TS22: bladder Moderate Regionally restricted Embryo_C1514_4_4B
TS22: urethra Moderate Regionally restricted Embryo_C1514_4_4A
TS22: reproductive system Moderate Regionally restricted Embryo_C1514_4_3B
TS22: genital tubercle Moderate Regionally restricted Embryo_C1514_4_3B
TS22: gonad Moderate Regionally restricted Embryo_C1514_4_6B
TS22: gland Moderate Regionally restricted Embryo_C1514_4_5A Expression was detected in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1514_4_5A
TS22: pituitary gland Moderate Regionally restricted Embryo_C1514_4_5A
TS22: pancreas Moderate Regionally restricted Embryo_C1514_4_5A
TS22: adrenal gland Moderate Regionally restricted Embryo_C1514_4_3A
TS22: cardiovascular system Moderate Regionally restricted Embryo_C1514_4_3A
TS22: heart Moderate Regionally restricted Embryo_C1514_4_3A
TS22: heart atrium Moderate Regionally restricted Embryo_C1514_4_3A
TS22: heart ventricle Weak Regionally restricted Embryo_C1514_4_4B
TS22: blood vessel Moderate Regionally restricted Embryo_C1514_4_5B
TS22: hemolymphoid system Moderate Regionally restricted Embryo_C1514_4_4A Expression was detected in the immune system.
TS22: spleen primordium Moderate Regionally restricted Embryo_C1514_4_6C
TS22: thymus primordium Moderate Regionally restricted Embryo_C1514_4_4A
TS22: appendicular skeleton Moderate Regionally restricted Embryo_C1514_4_3C Expression was detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_C1514_4_2B
TS22: face Weak Regionally restricted Embryo_C1514_4_5A Expression was weak in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C1514_4_6B
TS22: tail Moderate Regionally restricted Embryo_C1514_4_4C
TS22: forelimb Strong Regionally restricted Embryo_C1514_4_1A
TS22: hindlimb Strong Regionally restricted Embryo_C1514_4_1A
TS22: integumental system Strong Regionally restricted Embryo_C1514_4_2C
TS22: skin Strong Regionally restricted Embryo_C1514_4_1A
TS22: hair Strong Regionally restricted Embryo_C1514_4_2C
TS22: vibrissa follicle Strong Regionally restricted Embryo_C1514_4_2C Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory