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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421254
Gene symbol: Ctnna1
Gene name: catenin alpha 1
Probe: MH783 probe 695
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH783; Specimen C1437: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1437_3_3C
TS22: central nervous system Strong Regionally restricted Embryo_C1437_3_3C
TS22: telencephalon Strong Regionally restricted Embryo_C1437_3_3C
TS22: cerebral cortex Moderate Regionally restricted Embryo_C1437_3_3A
TS22: neocortex Moderate Regionally restricted Embryo_C1437_3_3A
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1437_3_3A
TS22: main olfactory bulb Moderate Regionally restricted Embryo_C1437_3_3A
TS22: piriform cortex Weak Scattered Embryo_C1437_3_1C
TS22: hippocampus Moderate Regionally restricted Embryo_C1437_3_2A
TS22: basal ganglia Strong Regionally restricted Embryo_C1437_3_3C
TS22: corpus striatum Moderate Regionally restricted Embryo_C1437_3_2A Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Scattered Embryo_C1437_3_3A
TS22: amygdala Weak Scattered Embryo_C1437_3_1B
TS22: telencephalon septum Moderate Regionally restricted Embryo_C1437_3_3D
TS22: pallidum Strong Regionally restricted Embryo_C1437_3_3C Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_C1437_3_3D
TS22: thalamus Strong Regionally restricted Embryo_C1437_3_3D
TS22: hypothalamus Moderate Regionally restricted Embryo_C1437_3_3D
TS22: midbrain Moderate Regionally restricted Embryo_C1437_3_3D
TS22: pretectum Weak Scattered Embryo_C1437_3_3A
TS22: superior colliculus Moderate Regionally restricted Embryo_C1437_3_3D
TS22: inferior colliculus Moderate Regionally restricted Embryo_C1437_3_3D
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1437_3_3D
TS22: hindbrain Moderate Regionally restricted Embryo_C1437_3_3C
TS22: cerebellum Moderate Regionally restricted Embryo_C1437_3_3C
TS22: pons Moderate Regionally restricted Embryo_C1437_3_3A
TS22: medulla oblongata Moderate Regionally restricted Embryo_C1437_3_3C
TS22: spinal cord Strong Regionally restricted Embryo_C1437_3_3C
TS22: choroid plexus Moderate Regionally restricted Embryo_C1437_3_3A
TS22: meninges Moderate Regionally restricted Embryo_C1437_3_3A
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1437_3_2A
TS22: cranial ganglion Weak Regionally restricted Embryo_C1437_3_2A
TS22: dorsal root ganglion Weak Regionally restricted Embryo_C1437_3_2C
TS22: eye Strong Regionally restricted Embryo_C1437_3_6D
TS22: retina Strong Regionally restricted Embryo_C1437_3_6D
TS22: lens Weak Regionally restricted Embryo_C1437_3_6D
TS22: optic nerve Absent
TS22: nose Strong Regionally restricted Embryo_C1437_3_2C
TS22: olfactory epithelium Strong Regionally restricted Embryo_C1437_3_2C
TS22: ear Weak Regionally restricted Embryo_C1437_3_5A
TS22: inner ear Weak Regionally restricted Embryo_C1437_3_5A
TS22: cochlea Weak Regionally restricted Embryo_C1437_3_4C
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C1437_3_5A
TS22: middle ear Weak Regionally restricted Embryo_C1437_3_6D
TS22: alimentary system Strong Regionally restricted Embryo_C1437_3_3D Expression was strong in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_C1437_3_2A
TS22: salivary gland Moderate Regionally restricted Embryo_C1437_3_2A
TS22: tongue Weak Regionally restricted Embryo_C1437_3_3A
TS22: tooth Moderate Regionally restricted Embryo_C1437_3_3A
TS22: palatal shelf Moderate Regionally restricted Embryo_C1437_3_3D
TS22: esophagus Weak Regionally restricted Embryo_C1437_3_3D
TS22: stomach Moderate Regionally restricted Embryo_C1437_3_5B
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_C1437_3_2B
TS22: pharynx Weak Regionally restricted Embryo_C1437_3_3C
TS22: larynx Weak Regionally restricted Embryo_C1437_3_3D
TS22: trachea Moderate Regionally restricted Embryo_C1437_3_3B
TS22: main bronchus Moderate Regionally restricted Embryo_C1437_3_3A
TS22: lung Strong Regionally restricted Embryo_C1437_3_2B
TS22: urinary system Strong Regionally restricted Embryo_C1437_3_5A Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C1437_3_5A
TS22: ureter Moderate Regionally restricted Embryo_C1437_3_4A
TS22: bladder Weak Regionally restricted Embryo_C1437_3_4A
TS22: urethra Weak Regionally restricted Embryo_C1437_3_3D
TS22: reproductive system Moderate Regionally restricted Embryo_C1437_3_3D
TS22: genital tubercle Moderate Regionally restricted Embryo_C1437_3_3D
TS22: gonad Weak Regionally restricted Embryo_C1437_3_6A
TS22: gland Strong Regionally restricted Embryo_C1437_3_3C Expression was strong in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1437_3_3A
TS22: pituitary gland Strong Regionally restricted Embryo_C1437_3_3C
TS22: pancreas Weak Regionally restricted Embryo_C1437_3_5A
TS22: adrenal gland Weak Regionally restricted Embryo_C1437_3_5A
TS22: cardiovascular system Weak Regionally restricted Embryo_C1437_3_3A
TS22: heart Weak Regionally restricted Embryo_C1437_3_3A
TS22: heart atrium Weak Regionally restricted Embryo_C1437_3_3B
TS22: heart ventricle Weak Regionally restricted Embryo_C1437_3_3A
TS22: blood vessel Weak Regionally restricted Embryo_C1437_3_3A
TS22: hemolymphoid system Weak Regionally restricted Embryo_C1437_3_3A Expression was weak in the immune system.
TS22: spleen primordium Weak Regionally restricted Embryo_C1437_3_6B
TS22: thymus primordium Weak Regionally restricted Embryo_C1437_3_3A
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_C1437_3_1A
TS22: face Weak Regionally restricted Embryo_C1437_3_4B Expression was weak in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Regionally restricted Embryo_C1437_3_4B Expression was weak in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C1437_3_3C
TS22: tail Weak Regionally restricted Embryo_C1437_3_3B
TS22: forelimb Weak Regionally restricted Embryo_C1437_3_1A
TS22: hindlimb Weak Regionally restricted Embryo_C1437_3_1C
TS22: integumental system Moderate Regionally restricted Embryo_C1437_3_1C
TS22: skin Weak Regionally restricted Embryo_C1437_3_3A
TS22: hair Moderate Regionally restricted Embryo_C1437_3_1C
TS22: vibrissa follicle Moderate Regionally restricted Embryo_C1437_3_1C Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory