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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421124
Gene symbol: Sema3c
Gene name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Probe: MH584 probe 516
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH584; Specimen C1344: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1344_4_3D
TS22: central nervous system Strong Regionally restricted Embryo_C1344_4_3D
TS22: telencephalon Strong Regionally restricted Embryo_C1344_4_2A
TS22: cerebral cortex Strong Regionally restricted Embryo_C1344_4_2A
TS22: neocortex Moderate Regionally restricted Embryo_C1344_4_3A
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1344_4_2D
TS22: main olfactory bulb Moderate Scattered Embryo_C1344_4_2D
TS22: piriform cortex Absent
TS22: hippocampus Strong Regionally restricted Embryo_C1344_4_2A
TS22: basal ganglia Strong Regionally restricted Embryo_C1344_4_1D
TS22: corpus striatum Moderate Regionally restricted Embryo_C1344_4_2A Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Moderate Regionally restricted Embryo_C1344_4_3A
TS22: amygdala Strong Regionally restricted Embryo_C1344_4_1D
TS22: telencephalon septum Moderate Regionally restricted Embryo_C1344_4_4B
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_C1344_4_3A
TS22: thalamus Strong Regionally restricted Embryo_C1344_4_3A
TS22: hypothalamus Strong Regionally restricted Embryo_C1344_4_3D
TS22: midbrain Strong Regionally restricted Embryo_C1344_4_3D
TS22: pretectum Moderate Regionally restricted Embryo_C1344_4_3B
TS22: superior colliculus Weak Regionally restricted Embryo_C1344_4_5A
TS22: inferior colliculus Weak Regionally restricted Embryo_C1344_4_4C
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C1344_4_3D
TS22: hindbrain Strong Regionally restricted Embryo_C1344_4_3C
TS22: cerebellum Weak Regionally restricted Embryo_C1344_4_5C
TS22: pons Strong Regionally restricted Embryo_C1344_4_3A
TS22: medulla oblongata Strong Regionally restricted Embryo_C1344_4_3C
TS22: spinal cord Strong Regionally restricted Embryo_C1344_4_3D
TS22: choroid plexus Strong Regionally restricted Embryo_C1344_4_4A
TS22: meninges Weak Regionally restricted Embryo_C1344_4_4C
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1344_4_3B
TS22: cranial ganglion Weak Regionally restricted Embryo_C1344_4_2A
TS22: dorsal root ganglion Weak Regionally restricted Embryo_C1344_4_3B
TS22: eye Strong Regionally restricted Embryo_C1344_4_5C
TS22: retina Weak Regionally restricted Embryo_C1344_4_6D
TS22: lens Absent
TS22: optic nerve Strong Regionally restricted Embryo_C1344_4_5C
TS22: nose Moderate Regionally restricted Embryo_C1344_4_3B
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1344_4_3B
TS22: ear Moderate Regionally restricted Embryo_C1344_4_3A
TS22: inner ear Moderate Regionally restricted Embryo_C1344_4_3A
TS22: cochlea Moderate Regionally restricted Embryo_C1344_4_3A
TS22: inner ear labyrinth Moderate Regionally restricted Embryo_C1344_4_6C
TS22: middle ear Weak Regionally restricted Embryo_C1344_4_1A
TS22: alimentary system Strong Regionally restricted Embryo_C1344_4_4C Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C1344_4_4C
TS22: salivary gland Absent
TS22: tongue Strong Regionally restricted Embryo_C1344_4_4B
TS22: tooth Moderate Regionally restricted Embryo_C1344_4_3A
TS22: palatal shelf Absent
TS22: esophagus Moderate Regionally restricted Embryo_C1344_4_4B
TS22: stomach Strong Regionally restricted Embryo_C1344_4_6B
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_C1344_4_4A
TS22: pharynx Strong Regionally restricted Embryo_C1344_4_4A
TS22: larynx Moderate Regionally restricted Embryo_C1344_4_4A
TS22: trachea Strong Regionally restricted Embryo_C1344_4_4A
TS22: main bronchus Strong Regionally restricted Embryo_C1344_4_3C
TS22: lung Strong Regionally restricted Embryo_C1344_4_3A
TS22: urinary system Strong Regionally restricted Embryo_C1344_4_3B Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C1344_4_3B
TS22: ureter Strong Regionally restricted Embryo_C1344_4_4D
TS22: bladder Strong Regionally restricted Embryo_C1344_4_4B
TS22: urethra Strong Regionally restricted Embryo_C1344_4_4B
TS22: reproductive system Strong Regionally restricted Embryo_C1344_4_4A
TS22: genital tubercle Strong Regionally restricted Embryo_C1344_4_4A
TS22: gonad Weak Regionally restricted Embryo_C1344_4_2B
TS22: gland Weak Regionally restricted Embryo_C1344_4_4B Expression was weak in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Weak Regionally restricted Embryo_C1344_4_4B
TS22: pancreas Weak Regionally restricted Embryo_C1344_4_5B
TS22: adrenal gland Weak Regionally restricted Embryo_C1344_4_3B
TS22: cardiovascular system Moderate Regionally restricted Embryo_C1344_4_3D
TS22: heart Moderate Regionally restricted Embryo_C1344_4_3D
TS22: heart atrium Moderate Regionally restricted Embryo_C1344_4_3D
TS22: heart ventricle Weak Regionally restricted Embryo_C1344_4_3C
TS22: blood vessel Weak Regionally restricted Embryo_C1344_4_5A
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Moderate Regionally restricted Embryo_C1344_4_5A Expression was detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Strong Regionally restricted Embryo_C1344_4_2C
TS22: face Moderate Regionally restricted Embryo_C1344_4_6D Expression was detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Strong Regionally restricted Embryo_C1344_4_3B
TS22: tail Strong Regionally restricted Embryo_C1344_4_4C
TS22: forelimb Strong Regionally restricted Embryo_C1344_4_1D
TS22: hindlimb Strong Regionally restricted Embryo_C1344_4_2B
TS22: integumental system Strong Regionally restricted Embryo_C1344_4_3D
TS22: skin Strong Regionally restricted Embryo_C1344_4_3D
TS22: hair Moderate Regionally restricted Embryo_C1344_4_1B
TS22: vibrissa follicle Moderate Regionally restricted Embryo_C1344_4_1B Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory