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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421101
Gene symbol: Itga4
Gene name: integrin alpha 4
Probe: MH550 probe 395
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH550; Specimen C1293: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1293_1_3B
TS22: central nervous system Strong Regionally restricted Embryo_C1293_1_3B
TS22: telencephalon Moderate Scattered Embryo_C1293_1_3B
TS22: cerebral cortex Moderate Scattered Embryo_C1293_1_3B
TS22: neocortex Moderate Scattered Embryo_C1293_1_3B
TS22: olfactory cortex Moderate Scattered Embryo_C1293_1_3A
TS22: main olfactory bulb Moderate Scattered Embryo_C1293_1_3A
TS22: piriform cortex Weak Scattered Embryo_C1293_1_1C
TS22: hippocampus Moderate Scattered Embryo_C1293_1_3B
TS22: basal ganglia Moderate Scattered Embryo_C1293_1_2A
TS22: corpus striatum Moderate Scattered Embryo_C1293_1_2A Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Scattered Embryo_C1293_1_3B
TS22: amygdala Moderate Scattered Embryo_C1293_1_1C
TS22: telencephalon septum Moderate Scattered Embryo_C1293_1_3C
TS22: pallidum Moderate Scattered Embryo_C1293_1_3A Expression was detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Scattered Embryo_C1293_1_3B
TS22: thalamus Strong Scattered Embryo_C1293_1_3B
TS22: hypothalamus Moderate Scattered Embryo_C1293_1_3C
TS22: midbrain Moderate Scattered Embryo_C1293_1_3A
TS22: pretectum Weak Scattered Embryo_C1293_1_3A
TS22: superior colliculus Weak Scattered Embryo_C1293_1_3A
TS22: inferior colliculus Weak Scattered Embryo_C1293_1_4B
TS22: midbrain tegmentum Weak Scattered Embryo_C1293_1_4C
TS22: hindbrain Moderate Regionally restricted Embryo_C1293_1_3C
TS22: cerebellum Moderate Scattered Embryo_C1293_1_3C
TS22: pons Moderate Regionally restricted Embryo_C1293_1_3C
TS22: medulla oblongata Moderate Scattered Embryo_C1293_1_3C
TS22: spinal cord Moderate Scattered Embryo_C1293_1_3B
TS22: choroid plexus Moderate Scattered Embryo_C1293_1_3C
TS22: meninges Moderate Regionally restricted Embryo_C1293_1_3C
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1293_1_2B
TS22: cranial ganglion Weak Regionally restricted Embryo_C1293_1_2B
TS22: dorsal root ganglion Weak Regionally restricted Embryo_C1293_1_2D
TS22: eye Weak Regionally restricted Embryo_C1293_1_1A
TS22: retina Weak Regionally restricted Embryo_C1293_1_1A
TS22: lens Weak Regionally restricted Embryo_C1293_1_1A
TS22: optic nerve Absent
TS22: nose Absent
TS22: olfactory epithelium Absent
TS22: ear Weak Regionally restricted Embryo_C1293_1_2D
TS22: inner ear Weak Regionally restricted Embryo_C1293_1_2D
TS22: cochlea Weak Regionally restricted Embryo_C1293_1_2D
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C1293_1_5D
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C1293_1_4C Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C1293_1_4C
TS22: salivary gland Weak Regionally restricted Embryo_C1293_1_2C
TS22: tongue Strong Regionally restricted Embryo_C1293_1_3D
TS22: tooth Weak Regionally restricted Embryo_C1293_1_3C
TS22: palatal shelf Weak Scattered Embryo_C1293_1_3A
TS22: esophagus Absent
TS22: stomach Absent
TS22: liver Moderate Regionally restricted Embryo_C1293_1_5C
TS22: respiratory system Weak Regionally restricted Embryo_C1293_1_5B
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Weak Regionally restricted Embryo_C1293_1_5B
TS22: urinary system Moderate Regionally restricted Embryo_C1293_1_5B Expression was detected in the genito-urinary system.
TS22: metanephros Moderate Regionally restricted Embryo_C1293_1_5B
TS22: ureter Weak Regionally restricted Embryo_C1293_1_4C
TS22: bladder Weak Regionally restricted Embryo_C1293_1_4A
TS22: urethra Moderate Regionally restricted Embryo_C1293_1_4A
TS22: reproductive system Moderate Scattered Embryo_C1293_1_3C
TS22: genital tubercle Moderate Scattered Embryo_C1293_1_3C
TS22: gonad Absent
TS22: gland Moderate Regionally restricted Embryo_C1293_1_3B Expression was detected in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1293_1_3B
TS22: pituitary gland Weak Regionally restricted Embryo_C1293_1_3C
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Strong Regionally restricted Embryo_C1293_1_4A
TS22: heart Weak Regionally restricted Embryo_C1293_1_3C
TS22: heart atrium Weak Regionally restricted Embryo_C1293_1_3C
TS22: heart ventricle Weak Regionally restricted Embryo_C1293_1_3C
TS22: blood vessel Strong Regionally restricted Embryo_C1293_1_4A
TS22: hemolymphoid system Strong Regionally restricted Embryo_C1293_1_4B Expression was strong in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Strong Regionally restricted Embryo_C1293_1_4B
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_C1293_1_1C
TS22: face Strong Regionally restricted Embryo_C1293_1_3C Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Regionally restricted Embryo_C1293_1_4A Expression was weak in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Strong Regionally restricted Embryo_C1293_1_4B
TS22: forelimb Strong Regionally restricted Embryo_C1293_1_1A
TS22: hindlimb Strong Regionally restricted Embryo_C1293_1_1A
TS22: integumental system Weak Regionally restricted Embryo_C1293_1_4A
TS22: skin Weak Regionally restricted Embryo_C1293_1_4A
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory