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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421088
Gene symbol: Sfn
Gene name: stratifin
Probe: MH531 probe 457
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH531; Specimen C1194: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1194_1_4A
TS22: central nervous system Strong Regionally restricted Embryo_C1194_1_4A
TS22: telencephalon Moderate Regionally restricted Embryo_C1194_1_3A
TS22: cerebral cortex Moderate Regionally restricted Embryo_C1194_1_3A
TS22: neocortex Moderate Regionally restricted Embryo_C1194_1_3A
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1194_1_3A
TS22: main olfactory bulb Moderate Regionally restricted Embryo_C1194_1_3A
TS22: piriform cortex Moderate Regionally restricted Embryo_C1194_1_2A
TS22: hippocampus Moderate Regionally restricted Embryo_C1194_1_2A
TS22: basal ganglia Weak Regionally restricted Embryo_C1194_1_2A
TS22: corpus striatum Weak Regionally restricted Embryo_C1194_1_2A Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Regionally restricted Embryo_C1194_1_3A
TS22: telencephalon septum Weak Regionally restricted Embryo_C1194_1_3D
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Weak Regionally restricted Embryo_C1194_1_3D
TS22: thalamus Weak Regionally restricted Embryo_C1194_1_3C
TS22: hypothalamus Weak Regionally restricted Embryo_C1194_1_3D
TS22: midbrain Moderate Regionally restricted Embryo_C1194_1_3D
TS22: pretectum Weak Regionally restricted Embryo_C1194_1_2D
TS22: superior colliculus Moderate Regionally restricted Embryo_C1194_1_3D
TS22: inferior colliculus Weak Regionally restricted Embryo_C1194_1_3D
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1194_1_3C
TS22: hindbrain Moderate Regionally restricted Embryo_C1194_1_3A
TS22: cerebellum Weak Regionally restricted Embryo_C1194_1_2D
TS22: pons Moderate Regionally restricted Embryo_C1194_1_5B
TS22: medulla oblongata Moderate Regionally restricted Embryo_C1194_1_3A
TS22: spinal cord Moderate Regionally restricted Embryo_C1194_1_3C
TS22: choroid plexus Strong Regionally restricted Embryo_C1194_1_4A
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1194_1_3A
TS22: cranial ganglion Moderate Regionally restricted Embryo_C1194_1_5B
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C1194_1_3A
TS22: eye Moderate Regionally restricted Embryo_C1194_1_1A
TS22: retina Moderate Regionally restricted Embryo_C1194_1_1A
TS22: lens Weak Regionally restricted Embryo_C1194_1_1A
TS22: optic nerve Absent
TS22: nose Strong Regionally restricted Embryo_C1194_1_3A
TS22: olfactory epithelium Strong Regionally restricted Embryo_C1194_1_3A
TS22: ear Strong Regionally restricted Embryo_C1194_1_1A
TS22: inner ear Moderate Regionally restricted Embryo_C1194_1_2C
TS22: cochlea Moderate Regionally restricted Embryo_C1194_1_2C
TS22: inner ear labyrinth Absent
TS22: middle ear Strong Regionally restricted Embryo_C1194_1_1A
TS22: alimentary system Strong Regionally restricted Embryo_C1194_1_3B Expression was strong in the digestive system.
TS22: intestine Strong Regionally restricted Embryo_C1194_1_3D
TS22: salivary gland Moderate Regionally restricted Embryo_C1194_1_3A
TS22: tongue Strong Regionally restricted Embryo_C1194_1_4B
TS22: tooth Strong Regionally restricted Embryo_C1194_1_3B
TS22: palatal shelf Strong Regionally restricted Embryo_C1194_1_3B
TS22: esophagus Strong Regionally restricted Embryo_C1194_1_4A
TS22: stomach Strong Regionally restricted Embryo_C1194_1_6C
TS22: liver Weak Regionally restricted Embryo_C1194_1_3A
TS22: respiratory system Strong Regionally restricted Embryo_C1194_1_4A
TS22: pharynx Strong Regionally restricted Embryo_C1194_1_4A
TS22: larynx Strong Regionally restricted Embryo_C1194_1_4A
TS22: trachea Strong Regionally restricted Embryo_C1194_1_4A
TS22: main bronchus Strong Regionally restricted Embryo_C1194_1_3D
TS22: lung Weak Regionally restricted Embryo_C1194_1_2B
TS22: urinary system Strong Regionally restricted Embryo_C1194_1_4A Expression was strong in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1194_1_5A
TS22: ureter Strong Regionally restricted Embryo_C1194_1_3B
TS22: bladder Strong Regionally restricted Embryo_C1194_1_4A
TS22: urethra Strong Regionally restricted Embryo_C1194_1_4A
TS22: reproductive system Strong Regionally restricted Embryo_C1194_1_4A
TS22: genital tubercle Strong Regionally restricted Embryo_C1194_1_4A
TS22: gonad Weak Regionally restricted Embryo_C1194_1_2A
TS22: gland Weak Regionally restricted Embryo_C1194_1_4C Expression was weak in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_C1194_1_4C
TS22: pituitary gland Weak Regionally restricted Embryo_C1194_1_4A
TS22: pancreas Weak Regionally restricted Embryo_C1194_1_4C
TS22: adrenal gland Weak Regionally restricted Embryo_C1194_1_2C
TS22: cardiovascular system Weak Regionally restricted Embryo_C1194_1_3D
TS22: heart Weak Regionally restricted Embryo_C1194_1_3D
TS22: heart atrium Weak Regionally restricted Embryo_C1194_1_4A
TS22: heart ventricle Weak Regionally restricted Embryo_C1194_1_3D
TS22: blood vessel Absent
TS22: hemolymphoid system Strong Regionally restricted Embryo_C1194_1_4B Expression was strong in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Strong Regionally restricted Embryo_C1194_1_4B
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Strong Regionally restricted Embryo_C1194_1_3B Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Strong Regionally restricted Embryo_C1194_1_3D
TS22: forelimb Strong Regionally restricted Embryo_C1194_1_6D
TS22: hindlimb Strong Regionally restricted Embryo_C1194_1_6D
TS22: integumental system Strong Regionally restricted Embryo_C1194_1_6D
TS22: skin Strong Regionally restricted Embryo_C1194_1_6D
TS22: hair Strong Regionally restricted Embryo_C1194_1_1C
TS22: vibrissa follicle Strong Regionally restricted Embryo_C1194_1_1C Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/09/2024
MGI 6.23 		The Jackson Laboratory