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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421062
Gene symbol: Syt13
Gene name: synaptotagmin XIII
Probe: MH494 probe 444
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH494; Specimen C1233: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1233_5_4B
TS22: central nervous system Strong Regionally restricted Embryo_C1233_5_4B
TS22: telencephalon Strong Regionally restricted Embryo_C1233_5_4B
TS22: cerebral cortex Strong Regionally restricted Embryo_C1233_5_4B
TS22: neocortex Moderate Regionally restricted Embryo_C1233_5_5B
TS22: olfactory cortex Strong Regionally restricted Embryo_C1233_5_4B
TS22: main olfactory bulb Strong Regionally restricted Embryo_C1233_5_4B
TS22: piriform cortex Weak Regionally restricted Embryo_C1233_5_2B
TS22: hippocampus Moderate Regionally restricted Embryo_C1233_5_5B
TS22: basal ganglia Strong Regionally restricted Embryo_C1233_5_3D
TS22: corpus striatum Moderate Regionally restricted Embryo_C1233_5_1C Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Weak Regionally restricted Embryo_C1233_5_1C
TS22: telencephalon septum Strong Regionally restricted Embryo_C1233_5_3D
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_C1233_5_3C
TS22: thalamus Strong Regionally restricted Embryo_C1233_5_3C
TS22: hypothalamus Strong Regionally restricted Embryo_C1233_5_3D
TS22: midbrain Strong Regionally restricted Embryo_C1233_5_3A
TS22: pretectum Moderate Regionally restricted Embryo_C1233_5_3A
TS22: superior colliculus Strong Regionally restricted Embryo_C1233_5_3A
TS22: inferior colliculus Strong Regionally restricted Embryo_C1233_5_3D
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_C1233_5_3D
TS22: hindbrain Strong Regionally restricted Embryo_C1233_5_4B
TS22: cerebellum Strong Regionally restricted Embryo_C1233_5_4B
TS22: pons Strong Regionally restricted Embryo_C1233_5_2B
TS22: medulla oblongata Strong Regionally restricted Embryo_C1233_5_4B
TS22: spinal cord Strong Regionally restricted Embryo_C1233_5_3B
TS22: choroid plexus Absent
TS22: meninges Weak Regionally restricted Embryo_C1233_5_5A
TS22: peripheral nervous system Strong Regionally restricted Embryo_C1233_5_4B
TS22: cranial ganglion Strong Regionally restricted Embryo_C1233_5_1D
TS22: dorsal root ganglion Strong Regionally restricted Embryo_C1233_5_4B
TS22: eye Strong Regionally restricted Embryo_C1233_5_1A
TS22: retina Strong Regionally restricted Embryo_C1233_5_1A
TS22: optic nerve Absent
TS22: nose Strong Regionally restricted Embryo_C1233_5_4D
TS22: olfactory epithelium Strong Regionally restricted Embryo_C1233_5_4D
TS22: ear Strong Regionally restricted Embryo_C1233_5_4D
TS22: inner ear Strong Regionally restricted Embryo_C1233_5_4D
TS22: cochlea Strong Regionally restricted Embryo_C1233_5_4D
TS22: inner ear labyrinth Strong Regionally restricted Embryo_C1233_5_1C
TS22: middle ear Weak Regionally restricted Embryo_C1233_5_6C
TS22: alimentary system Moderate Regionally restricted Embryo_C1233_5_3C Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1233_5_3A
TS22: salivary gland Weak Regionally restricted Embryo_C1233_5_5A
TS22: tongue Moderate Regionally restricted Embryo_C1233_5_3C
TS22: tooth Weak Regionally restricted Embryo_C1233_5_3B
TS22: palatal shelf Absent
TS22: esophagus Moderate Regionally restricted Embryo_C1233_5_3C
TS22: stomach Moderate Regionally restricted Embryo_C1233_5_6B
TS22: liver Weak Regionally restricted Embryo_C1233_5_4A
TS22: respiratory system Moderate Regionally restricted Embryo_C1233_5_2B
TS22: pharynx Weak Regionally restricted Embryo_C1233_5_3B
TS22: larynx Weak Regionally restricted Embryo_C1233_5_3B
TS22: trachea Weak Regionally restricted Embryo_C1233_5_3B
TS22: main bronchus Weak Regionally restricted Embryo_C1233_5_3A
TS22: lung Moderate Regionally restricted Embryo_C1233_5_2B
TS22: urinary system Strong Regionally restricted Embryo_C1233_5_3C Expression was strong in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1233_5_5A
TS22: ureter Weak Regionally restricted Embryo_C1233_5_3C
TS22: bladder Weak Regionally restricted Embryo_C1233_5_3C
TS22: urethra Weak Regionally restricted Embryo_C1233_5_3C
TS22: reproductive system Strong Regionally restricted Embryo_C1233_5_3C
TS22: genital tubercle Strong Regionally restricted Embryo_C1233_5_3C
TS22: gonad Absent
TS22: gland Strong Regionally restricted Embryo_C1233_5_4D Expression was strong in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1233_5_4A
TS22: pituitary gland Moderate Regionally restricted Embryo_C1233_5_4A
TS22: pancreas Strong Regionally restricted Embryo_C1233_5_4D
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C1233_5_3B
TS22: heart Weak Regionally restricted Embryo_C1233_5_3B
TS22: heart atrium Weak Regionally restricted Embryo_C1233_5_3B
TS22: heart ventricle Weak Regionally restricted Embryo_C1233_5_3C
TS22: blood vessel Absent
TS22: hemolymphoid system Weak Regionally restricted Embryo_C1233_5_3A Expression was weak in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Weak Regionally restricted Embryo_C1233_5_3A
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1233_5_1A Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Moderate Regionally restricted Embryo_C1233_5_5B
TS22: face Moderate Regionally restricted Embryo_C1233_5_3D Expression was detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Regionally restricted Embryo_C1233_5_2C Expression was weak in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1233_5_6A
TS22: tail Strong Regionally restricted Embryo_C1233_5_3B
TS22: forelimb Weak Regionally restricted Embryo_C1233_5_6D
TS22: hindlimb Moderate Regionally restricted Embryo_C1233_5_6C
TS22: integumental system Moderate Regionally restricted Embryo_C1233_5_3B
TS22: skin Moderate Regionally restricted Embryo_C1233_5_3B
TS22: hair Weak Regionally restricted Embryo_C1233_5_6A
TS22: vibrissa follicle Weak Regionally restricted Embryo_C1233_5_6A Expression was weak in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory