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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421028
Gene symbol: Ptpru
Gene name: protein tyrosine phosphatase receptor type U
Probe: MH427 probe 298
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH427; Specimen C1036: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1036_4_3C
TS22: central nervous system Strong Regionally restricted Embryo_C1036_4_3C
TS22: telencephalon Strong Regionally restricted Embryo_C1036_4_4A
TS22: cerebral cortex Strong Regionally restricted Embryo_C1036_4_4A
TS22: neocortex Strong Regionally restricted Embryo_C1036_4_4A
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1036_4_4A
TS22: main olfactory bulb Moderate Regionally restricted Embryo_C1036_4_4A
TS22: piriform cortex Moderate Scattered Embryo_C1036_4_5C
TS22: hippocampus Strong Regionally restricted Embryo_C1036_4_3D
TS22: basal ganglia Moderate Regionally restricted Embryo_C1036_4_5B
TS22: corpus striatum Weak Regionally restricted Embryo_C1036_4_5B Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Moderate Regionally restricted Embryo_C1036_4_2C
TS22: amygdala Moderate Regionally restricted Embryo_C1036_4_5B
TS22: telencephalon septum Moderate Regionally restricted Embryo_C1036_4_3C
TS22: pallidum Weak Regionally restricted Embryo_C1036_4_2C Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Moderate Regionally restricted Embryo_C1036_4_4B
TS22: thalamus Moderate Regionally restricted Embryo_C1036_4_2B
TS22: hypothalamus Strong Regionally restricted Embryo_C1036_4_4B
TS22: midbrain Strong Regionally restricted Embryo_C1036_4_3C
TS22: pretectum Weak Scattered Embryo_C1036_4_3D
TS22: superior colliculus Strong Regionally restricted Embryo_C1036_4_3C
TS22: inferior colliculus Moderate Regionally restricted Embryo_C1036_4_3C
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C1036_4_3B
TS22: hindbrain Strong Regionally restricted Embryo_C1036_4_4A
TS22: cerebellum Moderate Regionally restricted Embryo_C1036_4_2B
TS22: pons Strong Regionally restricted Embryo_C1036_4_4C
TS22: medulla oblongata Strong Regionally restricted Embryo_C1036_4_4A
TS22: spinal cord Moderate Regionally restricted Embryo_C1036_4_3D
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1036_4_5A
TS22: cranial ganglion Weak Scattered Embryo_C1036_4_5A
TS22: dorsal root ganglion Absent
TS22: eye Moderate Regionally restricted Embryo_C1036_4_5D
TS22: retina Moderate Regionally restricted Embryo_C1036_4_5D
TS22: optic nerve Absent
TS22: nose Strong Regionally restricted Embryo_C1036_4_2D
TS22: olfactory epithelium Strong Regionally restricted Embryo_C1036_4_2C
TS22: ear Strong Regionally restricted Embryo_C1036_4_2C
TS22: inner ear Strong Regionally restricted Embryo_C1036_4_2C
TS22: cochlea Strong Regionally restricted Embryo_C1036_4_2C
TS22: inner ear labyrinth Strong Regionally restricted Embryo_C1036_4_1B
TS22: middle ear Moderate Regionally restricted Embryo_C1036_4_1B
TS22: alimentary system Strong Regionally restricted Embryo_C1036_4_3D Expression was strong in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_C1036_4_3D
TS22: salivary gland Weak Regionally restricted Embryo_C1036_4_5B
TS22: tongue Weak Regionally restricted Embryo_C1036_4_3C
TS22: tooth Strong Regionally restricted Embryo_C1036_4_3B
TS22: palatal shelf Strong Regionally restricted Embryo_C1036_4_3D
TS22: esophagus Strong Regionally restricted Embryo_C1036_4_3C
TS22: stomach Strong Regionally restricted Embryo_C1036_4_1B
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_C1036_4_3D
TS22: pharynx Strong Regionally restricted Embryo_C1036_4_3D
TS22: larynx Strong Regionally restricted Embryo_C1036_4_3D
TS22: trachea Weak Regionally restricted Embryo_C1036_4_4A
TS22: main bronchus Moderate Regionally restricted Embryo_C1036_4_4B
TS22: lung Absent
TS22: urinary system Strong Regionally restricted Embryo_C1036_4_3A Expression was strong in the genito-urinary system.
TS22: metanephros Strong Regionally restricted Embryo_C1036_4_3A
TS22: ureter Moderate Regionally restricted Embryo_C1036_4_3D
TS22: bladder Weak Regionally restricted Embryo_C1036_4_3C
TS22: urethra Moderate Regionally restricted Embryo_C1036_4_3D
TS22: reproductive system Moderate Regionally restricted Embryo_C1036_4_3D
TS22: genital tubercle Moderate Regionally restricted Embryo_C1036_4_3D
TS22: gonad Absent
TS22: gland Strong Regionally restricted Embryo_C1036_4_3B Expression was strong in the endocrine system.
TS22: thyroid gland Moderate Regionally restricted Embryo_C1036_4_3B
TS22: pituitary gland Strong Regionally restricted Embryo_C1036_4_3B
TS22: pancreas Absent
TS22: adrenal gland Moderate Scattered Embryo_C1036_4_3B
TS22: cardiovascular system Weak Regionally restricted Embryo_C1036_4_4A
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Moderate Regionally restricted Embryo_C1036_4_1B Expression was detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1036_4_1C
TS22: tail Weak Regionally restricted Embryo_C1036_4_3B
TS22: hindlimb Moderate Regionally restricted Embryo_C1036_4_1B
TS22: integumental system Strong Regionally restricted Embryo_C1036_4_1B
TS22: skin Absent
TS22: hair Strong Regionally restricted Embryo_C1036_4_1B
TS22: vibrissa follicle Strong Regionally restricted Embryo_C1036_4_1B Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory