About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421012
Gene symbol: Lhx6
Gene name: LIM homeobox protein 6
Probe: MH407 probe 250
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH407; Specimen C1082: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1082_6_3A
TS22: central nervous system Strong Regionally restricted Embryo_C1082_6_3A
TS22: telencephalon Strong Regionally restricted Embryo_C1082_6_3A
TS22: cerebral cortex Strong Regionally restricted Embryo_C1082_6_2C
TS22: neocortex Strong Scattered Embryo_C1082_6_2C
TS22: olfactory cortex Weak Regionally restricted Embryo_C1082_6_1D
TS22: main olfactory bulb Absent
TS22: piriform cortex Weak Regionally restricted Embryo_C1082_6_1D
TS22: hippocampus Moderate Scattered Embryo_C1082_6_5C
TS22: basal ganglia Strong Regionally restricted Embryo_C1082_6_3A
TS22: corpus striatum Strong Regionally restricted Embryo_C1082_6_2A Expression was strong in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Moderate Regionally restricted Embryo_C1082_6_1B
TS22: telencephalon septum Strong Regionally restricted Embryo_C1082_6_4A
TS22: pallidum Strong Regionally restricted Embryo_C1082_6_3A Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_C1082_6_4A
TS22: thalamus Absent
TS22: hypothalamus Strong Regionally restricted Embryo_C1082_6_4A
TS22: midbrain Absent
TS22: pretectum Absent
TS22: superior colliculus Absent
TS22: inferior colliculus Absent
TS22: midbrain tegmentum Absent
TS22: hindbrain Absent
TS22: cerebellum Absent
TS22: pons Absent
TS22: medulla oblongata Absent
TS22: spinal cord Absent
TS22: choroid plexus Absent
TS22: meninges Weak Regionally restricted Embryo_C1082_6_2D
TS22: peripheral nervous system Absent
TS22: cranial ganglion Absent
TS22: dorsal root ganglion Absent
TS22: eye Weak Regionally restricted Embryo_C1082_6_1B
TS22: retina Weak Regionally restricted Embryo_C1082_6_1B
TS22: lens Absent
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C1082_6_3A
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1082_6_3A
TS22: ear Moderate Regionally restricted Embryo_C1082_6_2B
TS22: inner ear Moderate Regionally restricted Embryo_C1082_6_2B
TS22: cochlea Moderate Regionally restricted Embryo_C1082_6_2B
TS22: inner ear labyrinth Absent
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C1082_6_4C Expression was strong in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_C1082_6_4A
TS22: salivary gland Absent
TS22: tongue Moderate Regionally restricted Embryo_C1082_6_3B
TS22: tooth Absent
TS22: palatal shelf Strong Regionally restricted Embryo_C1082_6_4C
TS22: esophagus Absent
TS22: stomach Absent
TS22: liver Absent
TS22: respiratory system Strong Regionally restricted Embryo_C1082_6_3C
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Strong Regionally restricted Embryo_C1082_6_3C
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_C1082_6_4D
TS22: urinary system Weak Regionally restricted Embryo_C1082_6_3A Expression was weak in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1082_6_2C
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_C1082_6_3A
TS22: urethra Absent
TS22: reproductive system Weak Regionally restricted Embryo_C1082_6_3D
TS22: genital tubercle Weak Regionally restricted Embryo_C1082_6_3D
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_C1082_6_4A Expression was weak in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Weak Scattered Embryo_C1082_6_4A
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Weak Regionally restricted Embryo_C1082_6_4A
TS22: heart Weak Regionally restricted Embryo_C1082_6_4A
TS22: heart atrium Absent
TS22: heart ventricle Weak Regionally restricted Embryo_C1082_6_4A
TS22: blood vessel Weak Regionally restricted Embryo_C1082_6_4A
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: lymphatic system Absent
TS22: appendicular skeleton Absent Embryo_C1082_6_2C Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Strong Regionally restricted Embryo_C1082_6_2B Expression was strong in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Regionally restricted Embryo_C1082_6_4A Expression was weak in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_C1082_6_5D
TS22: tail Weak Regionally restricted Embryo_C1082_6_2D
TS22: forelimb Weak Regionally restricted Embryo_C1082_6_5D
TS22: hindlimb Moderate Regionally restricted Embryo_C1082_6_1C
TS22: integumental system Strong Regionally restricted Embryo_C1082_6_2A
TS22: skin Moderate Regionally restricted Embryo_C1082_6_5A
TS22: hair Strong Regionally restricted Embryo_C1082_6_2A
TS22: vibrissa follicle Strong Regionally restricted Embryo_C1082_6_2A Expression was strong in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory