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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5420962
Gene symbol: Cnr1
Gene name: cannabinoid receptor 1
Probe: MH99 probe 32
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH99; Specimen MH180: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_MH180_3_5D
TS22: central nervous system Strong Regionally restricted
TS22: telencephalon Strong Regionally restricted Embryo_MH180_3_5D
TS22: cerebral cortex Strong Regionally restricted Embryo_MH180_3_5D
TS22: neocortex Strong Regionally restricted Embryo_MH180_3_5D
TS22: olfactory cortex Strong Regionally restricted Embryo_MH180_3_5D
TS22: main olfactory bulb Strong Regionally restricted Embryo_MH180_3_5D
TS22: hippocampus Strong Ubiquitous Embryo_MH180_3_3C
TS22: basal ganglia Moderate Regionally restricted Embryo_MH180_3_5A
TS22: corpus striatum Moderate Ubiquitous Embryo_MH180_3_3C Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Moderate Ubiquitous Embryo_MH180_3_3C
TS22: amygdala Moderate Ubiquitous Embryo_MH180_3_3C
TS22: telencephalon septum Moderate Regionally restricted Embryo_MH180_3_3C
TS22: pallidum Moderate Regionally restricted Embryo_MH180_3_3C Expression was detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_MH180_3_5A
TS22: thalamus Strong Regionally restricted Embryo_MH180_3_5A
TS22: hypothalamus Strong Regionally restricted Embryo_MH180_3_5A
TS22: midbrain Strong Regionally restricted Embryo_MH180_3_5A
TS22: pretectum Moderate Ubiquitous Embryo_MH180_3_6B
TS22: superior colliculus Strong Regionally restricted Embryo_MH180_3_5A
TS22: inferior colliculus Moderate Scattered Embryo_MH180_3_5A
TS22: midbrain tegmentum Moderate Ubiquitous Embryo_MH180_3_6B
TS22: hindbrain Moderate Ubiquitous Embryo_MH180_3_5A
TS22: cerebellum Moderate Regionally restricted Embryo_MH180_3_5A
TS22: pons Moderate Ubiquitous Embryo_MH180_3_5A
TS22: medulla oblongata Moderate Ubiquitous Embryo_MH180_3_5A
TS22: spinal cord Strong Regionally restricted Embryo_MH180_3_5A
TS22: choroid plexus Absent
TS22: peripheral nervous system Strong Regionally restricted
TS22: cranial ganglion Strong Ubiquitous Embryo_MH180_3_3D
TS22: dorsal root ganglion Strong Ubiquitous Embryo_MH180_3_3D
TS22: eye Strong Regionally restricted
TS22: retina Strong Regionally restricted Embryo_MH180_3_1C
TS22: lens Absent
TS22: cornea Absent
TS22: optic nerve Absent
TS22: eyelid Absent
TS22: nose Moderate Regionally restricted Embryo_MH180_3_4C
TS22: olfactory epithelium Moderate Regionally restricted Embryo_MH180_3_4C
TS22: ear Strong Regionally restricted Embryo_MH180_3_3C
TS22: cochlea Strong Ubiquitous Embryo_MH180_3_3C
TS22: inner ear labyrinth Strong Ubiquitous Embryo_MH180_3_3C
TS22: alimentary system Moderate Regionally restricted Expression was detected in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_MH180_3_6A
TS22: tongue Moderate Regionally restricted Embryo_MH180_3_5A
TS22: tooth Absent
TS22: palatal shelf Absent
TS22: esophagus Absent
TS22: liver Absent
TS22: respiratory system Absent
TS22: urinary system Weak Regionally restricted Embryo_MH180_3_6B Expression was weak in the genito-urinary system.
TS22: metanephros Absent
TS22: bladder Weak Regionally restricted Embryo_MH180_3_5D
TS22: urethra Weak Regionally restricted Embryo_MH180_3_5D
TS22: reproductive system Weak Regionally restricted Embryo_MH180_3_5D
TS22: testis Absent Expression was not detected in the testicle.
TS22: ovary Weak Ubiquitous Embryo_MH180_3_2A
TS22: gland Weak Regionally restricted Embryo_MH180_3_6B Expression was weak in the endocrine system.
TS22: thyroid gland Weak Ubiquitous Embryo_MH180_3_6B
TS22: pituitary gland Absent
TS22: cardiovascular system Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: musculature Moderate Ubiquitous Embryo_MH180_3_3A
TS22: hindlimb Moderate Regionally restricted Embryo_MH180_3_2D
TS22: integumental system Absent
TS22: vibrissa follicle Moderate Ubiquitous Embryo_MH180_3_3A Expression was detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/21/2024
MGI 6.23 		The Jackson Laboratory