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Gene Expression Data
Assay Details
Assay
Reference: J:86049 Gavalas A, et al., Neuronal defects in the hindbrain of Hoxa1, Hoxb1 and Hoxb2 mutants reflect regulatory interactions among these Hox genes. Development. 2003 Dec;130(23):5663-79
Assay type: RNA in situ
MGI Accession ID: MGI:5300167
Gene symbol: Phox2b
Gene name: paired-like homeobox 2b
Probe: Phox2b cDNA3
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 2I: embryonic day 10.5 (more )
Note: This specimen is flat-mounted.
Structure Level Pattern Image Note
TS17: hindbrain Present 2I
TS17: rhombomere 2 Present Non-Uniform 2I Expression is upregulated in a medial column extending from rhombomere 2 to 6.
TS17: rhombomere 3 Present Non-Uniform 2I Expression is upregulated in a medial column extending from rhombomere 2 to 6.
TS17: rhombomere 4 Present Non-Uniform 2I Expression is strongest in a ventral rhombomere 4 column. It is also present in a dorsal column extending from rhombomere 4 posteriorly. The medial and dorsal columns overlap in rhombomeres 4, 5 and 6.
TS17: rhombomere 5 Present Non-Uniform 2I Expression is upregulated in a medial column extending from rhombomere 2 to 6. It is also present in a dorsal column extending from rhombomere 4 posteriorly. The medial and dorsal columns overlap in rhombomeres 4, 5 and 6.
TS17: rhombomere 6 Present Non-Uniform 2I Expression is upregulated in a medial column extending from rhombomere 2 to 6. It is also present in a dorsal column extending from rhombomere 4 posteriorly. The medial and dorsal columns overlap in rhombomeres 4, 5 and 6.

Specimen 2J: embryonic day 10.5; Hoxb1tm1Brd/Hoxb1tm1Brd (more )
Note: This specimen is flat-mounted.
Structure Level Pattern Image Note
TS17: hindbrain Present 2J Expression is present in the mutant, but unlike in wild-type, the medial and dorsal columns overlap by only two rhombomeres.
TS17: rhombomere 4 Present 2J In the mutant there is no rhombomere 4 specific upregulation of expression, leaving it similar to that found in rhombomeres 2 and 3.
TS17: rhombomere 2 Present 2J
TS17: rhombomere 3 Present 2J

Specimen 2K: embryonic day 10.5; Hoxb2tm1Fmr/Hoxb2tm1Fmr (more )
Note: This specimen is flat-mounted.
Structure Level Pattern Image Note
TS17: hindbrain Present Non-Uniform 2K
TS17: rhombomere 4 Present Non-Uniform 2K Expression levels in ventral rhombomere 4 are lower than in wild type but remain elevated when compared with neighboring rhombomeres.
TS17: rhombomere 3 Present 2K
TS17: rhombomere 5 Present 2K

Specimen 2L: embryonic day 10.5; Hoxa1tm1Ipc/Hoxa1tm1Ipc (more )
Note: This specimen is flat-mounted.
Structure Level Pattern Image Note
TS17: hindbrain Present 2L Expression is present in the mutant, but there is no rhombomere 4 specific upregulation of expression. Unlike in wild-type, the medial and dorsal columns overlap by only one rhombomere.
TS17: rhombomere 4 Present 2L Expression is present in the mutant, but there is no rhombomere 4 specific upregulation of expression. Unlike in wild-type, the medial and dorsal columns overlap by only one rhombomere.

Specimen 5A: embryonic day 12.5 (more )
Note: This specimen is flat-mounted; this is a ventricular view.
Structure Level Pattern Image Note
TS20: facial ganglion Present 5A

Specimen 5B: embryonic day 12.5; Hoxb1tm1Brd/Hoxb1tm1Brd (more )
Note: This specimen is flat-mounted; this is a ventricular view.
Structure Level Pattern Image Note
TS20: facial ganglion Absent 5B There is a lack of expression in the migratory pathway of the facial motoneurons.

Specimen 5C: embryonic day 12.5; Hoxb2tm1Fmr/Hoxb2tm1Fmr (more )
Note: This specimen is flat-mounted; this is a ventricular view.
Structure Level Pattern Image Note
TS20: facial ganglion Present 5C

Specimen 5D: embryonic day 12.5 (more )
Note: This specimen is flat-mounted; this is a pial view.
Structure Level Pattern Image Note
TS20: trigeminal ganglion Present 5D
TS20: facial ganglion Present 5D

Specimen 5E: embryonic day 12.5; Hoxb1tm1Brd/Hoxb1tm1Brd (more )
Note: This specimen is flat-mounted; this is a pial view.
Structure Level Pattern Image Note
TS20: trigeminal ganglion Present 5E
TS20: facial ganglion Absent 5E There is a lack of expression in the migratory pathway of the facial motoneurons.
TS20: cranial ganglion Present Non-Uniform 5E Expression is present in ectopic nuclei.

Specimen 5F: embryonic day 12.5; Hoxb2tm1Fmr/Hoxb2tm1Fmr (more )
Note: This specimen is flat-mounted; this is a pial view.
Structure Level Pattern Image Note
TS20: facial ganglion Present 5F
TS20: trigeminal ganglion Present 5F
TS20: cranial ganglion Present Non-Uniform 5F Expression is present in ectopic nuclei.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory