Gene Expression Data
Assay Details
Assay
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Reference:
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J:86049
Gavalas A, et al., Neuronal defects in the hindbrain of Hoxa1, Hoxb1 and Hoxb2 mutants reflect regulatory interactions among these Hox genes. Development. 2003 Dec;130(23):5663-79
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:5300165
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Gene symbol:
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Neurod4
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Gene name:
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neurogenic differentiation 4
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Probe:
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Math3 cDNA1
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Results
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Specimen
2A:
embryonic day 10.5
(more )
Note: This specimen is flat-mounted.
Specimen
2A:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: hindbrain |
Weak |
Non-Uniform |
2A
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There is expression in a broad ventral domain throughout the hindbrain; there is higher expression in a narrow stripe adjacent to the floorplate.
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TS17: rhombomere 4 |
Present |
Non-Uniform |
2A
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Expression is particularly strong in a ventral rhombomere 4 column. It is also present in a medial column extending from rhombomere 4-6 and in a dorsal column extending from rhombomere 4 caudally.
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TS17: rhombomere 5 |
Present |
Non-Uniform |
2A
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Expression is present in a medial column extending from rhombomere 4-6 and in a dorsal column extending from rhombomere 4 caudally.
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TS17: rhombomere 6 |
Present |
Non-Uniform |
2A
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Expression is present in a medial column extending from rhombomere 4-6 and in a dorsal column extending from rhombomere 4 caudally.
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Specimen
2B:
(close )
Genetic Background:
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involves: 129S7/SvEvBrd * C57BL/6
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Mutant Allele(s):
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Hoxb1tm1Brd/Hoxb1tm1Brd
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: hindbrain |
Present |
Non-Uniform |
2B
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Expression within the dorsal column extends throughout only two rhombomeres.
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TS17: rhombomere 4 |
Present |
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2B
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There is no rhombomere 4 specific upregulation of the ventral column of the mutant, leaving expression similar to that seen in rhombomeres 2 and 3. Expression within the dorsal column extends throughout only two rhombomeres.
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TS17: rhombomere 2 |
Present |
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2B
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TS17: rhombomere 3 |
Present |
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2B
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Specimen
2C:
(close )
Genetic Background:
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involves: 129
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Mutant Allele(s):
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Hoxb2tm1Fmr/Hoxb2tm1Fmr
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
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Specimen
2D:
(close )
Genetic Background:
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involves: 129S2/SvPas * C57BL/6
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Mutant Allele(s):
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Hoxa1tm1Ipc/Hoxa1tm1Ipc
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: hindbrain |
Present |
Non-Uniform |
2D
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Expression is present in the mutant but, unlike in wild-type, there is no rhombomere 4 specific upregulation of the ventral column. Expression within the dorsal column extends throughout only one rhombomere.
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Specimen
2E:
embryonic day 11.5
(more )
Note: This specimen is flat-mounted.
Specimen
2E:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: hindbrain |
Present |
Non-Uniform |
2E
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Expression is resolved into longitudinal stripes; it is particularly strong in two stripes in ventral rhombomere 4 and in a medial column extending from rhombomere 4-6. There is also some upregulation in a more dorsal column extending caudally from r4.
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Specimen
2F:
(close )
Genetic Background:
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involves: 129S7/SvEvBrd * C57BL/6
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Mutant Allele(s):
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Hoxb1tm1Brd/Hoxb1tm1Brd
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
|
Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: hindbrain |
Present |
Non-Uniform |
2F
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Expression is present in the mutant but, unlike in wild-type, there is no rhombomere 4 specific upregulation of the ventral column. Expression within the dorsal column extended throughout only two rhombomeres.
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Specimen
2G:
(close )
Genetic Background:
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involves: 129
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Mutant Allele(s):
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Hoxb2tm1Fmr/Hoxb2tm1Fmr
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
|
4% Paraformaldehyde
|
Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: hindbrain |
Present |
Non-Uniform |
2G
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Expression is present in the mutant but, unlike in wild-type, there is no rhombomere 4 specific upregulation of the ventral column. Instead expression is variable in this domain.
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Specimen
2H:
(close )
Genetic Background:
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involves: 129S2/SvPas * C57BL/6
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Mutant Allele(s):
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Hoxa1tm1Ipc/Hoxa1tm1Ipc
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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This specimen is flat-mounted.
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: hindbrain |
Present |
Non-Uniform |
2H
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Expression is present in the mutant but, unlike in wild-type, there is no rhombomere 4 specific upregulation of the ventral column. Expression within the dorsal column extends throughout only one rhombomere.
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