Gene Expression Data
Assay Details
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Assay
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Reference:
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J:174497
Funatsu N, et al., Gene expression analysis of the late embryonic mouse cerebral cortex using DNA microarray: identification of several region- and layer-specific genes. Cereb Cortex. 2004 Sep;14(9):1031-44
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:5293695
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Gene symbol:
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Npy
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Gene name:
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neuropeptide Y
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Probe:
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Npy probe1
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Results
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Specimen
3B sagittal:
embryonic day 16.5
(more  )
Specimen
3B sagittal:
(close  )
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Genetic Background:
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ICR
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Age:
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embryonic day 16.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS24: cortical plate |
Present |
Regionally restricted |
3B sagittal
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Expression was detected in the dorsal region. The deep cortical plate layer was more densely stained than the middle. There was a high rostrolateral-low caudomedial gradation of expression.
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| TS24: cortical subplate |
Present |
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3B sagittal
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Specimen
3B coronal and magnification:
embryonic day 16.5
(more )
Specimen
3B coronal and magnification:
(close )
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Genetic Background:
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ICR
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Age:
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embryonic day 16.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS24: cortical plate |
Present |
Regionally restricted |
3B magnification
,
3B coronal
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Expression was detected in the dorsal region. The deep cortical plate layer was more densely stained than the middle. There was a high rostrolateral-low caudomedial gradation of expression.
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| TS24: cortical subplate |
Present |
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3B coronal
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3B magnification
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Specimen
5A:
embryonic day 18.5
(more )
Note: Sagittal section.
Specimen
5A:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Sagittal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5A
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Expression in the dorsal deep layer was caudally distributed near the occipital pole.
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Specimen
5B:
embryonic day 18.5; Pax6Sey/ Pax6Sey
(more )
Note: Sagittal section.
Specimen
5B:
(close )
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Genetic Background:
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involves: CBA
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Sagittal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5B
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Expression in the dorsal deep layer was shifted rostrally in the mutant compared to wild type.
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Specimen
5C:
embryonic day 18.5
(more )
Note: Rostral coronal section.
Specimen
5C:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Rostral coronal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5C
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Expression was faint in the rostral part of the cortex.
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Specimen
5D:
embryonic day 18.5; Pax6Sey/ Pax6Sey
(more )
Note: Rostral coronal section.
Specimen
5D:
(close )
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Genetic Background:
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involves: CBA
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Rostral coronal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5D
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Expression was highest in the rostral cortical plate in the mutant.
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Specimen
5E:
embryonic day 18.5
(more )
Note: Central coronal section.
Specimen
5E:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Central coronal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5E
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Expression was highly detected in the central part of the cortex. There was a broad distribution of expressing cells in the deep cortical plate.
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Specimen
5F:
embryonic day 18.5; Pax6Sey/ Pax6Sey
(more )
Note: Central coronal section.
Specimen
5F:
(close )
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Genetic Background:
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involves: CBA
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Central coronal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5F
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Expression was detected in an intensely labeled narrow band at the bottom of the cortical plate, and a few cells were abnormally scattered all over the thin cortical plate.
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Specimen
5G:
embryonic day 18.5
(more )
Note: Caudal coronal section.
Specimen
5G:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Caudal coronal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5G
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Expression was highly detected in the caudal part of the cortex. There was a broad distribution of expressing cells in the deep cortical plate.
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Specimen
5H:
embryonic day 18.5; Pax6Sey/ Pax6Sey
(more )
Note: Caudal coronal section.
Specimen
5H:
(close )
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Genetic Background:
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involves: CBA
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Mutant Allele(s):
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Pax6Sey/Pax6Sey
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Caudal coronal section.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: cortical plate |
Present |
Regionally restricted |
5H
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Expression was detected in an intensely labeled narrow band at the bottom of the cortical plate, and a few cells were abnormally scattered all over the thin cortical plate.
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