About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:174767 Tang F, et al., Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One. 2011;6(6):e21208
Assay type: RT-PCR
MGI Accession ID: MGI:5289377
Gene symbol: Onecut1
Gene name: one cut domain, family member 1
Probe: Mm00839394_m1
Assay notes: These results were reported in Table S6. They were obtained using TaqMan real time PCR using individual blastomeres from either 2- or 4-cell embryos. In the Supplementary Materials and Methods, the authors reported that a gene was detected when the real-time PCR reaction had a Ct value of <32. Thus, we have interpreted Ct values of <=31.5 as present, >=32.5 as absent, and 31.6-32.4 as ambiguous.
Results
 Sample Information Bands Other Sample Information
Lane AgeStructure Size Not Specified Amount Genetic BackgroundMutant Allele(s)Sex Note
2-cell-A1-1 E1.5 TS2: 2-cell stage embryo Absent (a) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 1 from embryo A.
2-cell-A1-2 E1.5 TS2: 2-cell stage embryo Absent (b) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 1 from embryo A.
2-cell-A2-1 E1.5 TS2: 2-cell stage embryo Present (c) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 2 from embryo A.
2-cell-A2-2 E1.5 TS2: 2-cell stage embryo Present (d) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 2 from embryo A.
2-cell-B1-1 E1.5 TS2: 2-cell stage embryo Present (e) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 1 from embryo B.
2-cell-B1-2 E1.5 TS2: 2-cell stage embryo Present (f) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 1 from embryo B.
2-cell-B2-1 E1.5 TS2: 2-cell stage embryo Present (g) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 2 from embryo B.
2-cell-B2-2 E1.5 TS2: 2-cell stage embryo Present (h) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 2 from embryo B.
2-cell-C1-1 E1.5 TS2: 2-cell stage embryo Present (i) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 1 from embryo C.
2-cell-C1-2 E1.5 TS2: 2-cell stage embryo Present (j) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 1 from embryo C.
2-cell-C2-1 E1.5 TS2: 2-cell stage embryo Present (k) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 2 from embryo C.
2-cell-C2-2 E1.5 TS2: 2-cell stage embryo Present (l) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 2 from embryo C.
4-cell-A1-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 1 from embryo A.
4-cell-A1-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 1 from embryo A.
4-cell-A2-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 2 from embryo A.
4-cell-A2-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 2 from embryo A.
4-cell-A3-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 3 from embryo A.
4-cell-A3-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 3 from embryo A.
4-cell-A4-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 4 from embryo A.
4-cell-A4-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 4 from embryo A.
4-cell-B1-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 1 from embryo B.
4-cell-B1-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 1 from embryo B.
4-cell-B2-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 2 from embryo B.
4-cell-B2-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 2 from embryo B.
4-cell-B3-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 3 from embryo B.
4-cell-B3-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 3 from embryo B.
4-cell-B4-1 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 4 from embryo B.
4-cell-B4-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 4 from embryo B.
4-cell-C1-1 E2.0 TS3: 4-cell stage embryo Present (n) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 1 from embryo C.
4-cell-C1-2 E2.0 TS3: 4-cell stage embryo Present (o) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 1 from embryo C.
4-cell-C2-1 E2.0 TS3: 4-cell stage embryo Present (p) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 2 from embryo C.
4-cell-C2-2 E2.0 TS3: 4-cell stage embryo Present (q) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 2 from embryo C.
4-cell-C3-1 E2.0 TS3: 4-cell stage embryo Present (r) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 3 from embryo C.
4-cell-C3-2 E2.0 TS3: 4-cell stage embryo Present (s) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 3 from embryo C.
4-cell-C4-1 E2.0 TS3: 4-cell stage embryo Absent (t) Not Specified; total RNA MF1 Not Specified This is the first replicate using blastomere 4 from embryo C.
4-cell-C4-2 E2.0 TS3: 4-cell stage embryo Absent (m) Not Specified; total RNA MF1 Not Specified This is the second replicate using blastomere 4 from embryo C.
Notes:
(a) The Ct value of this reaction was 35.12.
(b) The Ct value of this reaction was 35.19.
(c) The Ct value of this reaction was 29.94.
(d) The Ct value of this reaction was 29.85.
(e) The Ct value of this reaction was 31.11.
(f) The Ct value of this reaction was 30.53.
(g) The Ct value of this reaction was 28.15.
(h) The Ct value of this reaction was 27.85.
(i) The Ct value of this reaction was 31.3.
(j) The Ct value of this reaction was 30.93.
(k) The Ct value of this reaction was 29.98.
(l) The Ct value of this reaction was 29.74.
(m) The Ct value of this reaction was 40.
(n) The Ct value of this reaction was 28.56.
(o) The Ct value of this reaction was 28.49.
(p) The Ct value of this reaction was 28.3.
(q) The Ct value of this reaction was 28.23.
(r) The Ct value of this reaction was 29.42.
(s) The Ct value of this reaction was 29.29.
(t) The Ct value of this reaction was 37.46.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory