F11r RT-PCR Gene Expression Assay

Gene Expression Data
Assay Details

Assay

Reference:	J:174767 Tang F, et al., Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One. 2011;6(6):e21208
Assay type:	RT-PCR
MGI Accession ID:	MGI:5289262
Gene symbol:	F11r
Gene name:	F11 receptor

Probe:

F11r-assay_9/15/20-FP_second allele, RP

Assay notes:

These results were reported in Table S7. They were obtained using TaqMan real time PCR using individual blastomeres from either 4- or 8-cell embryos. Two different primer sets were used with each sample in order to examine allele specific expression. The assay id presented in the raw CT values sheet of Table S7 differed from that associated with the primers in the assays design sheet; however, since results from only one assay were presented for this gene, it was assumed both ids referred to the same data. In the Supplementary Materials and Methods, the authors reported that a gene was detected when the real-time PCR reaction had a Ct value of <32. Thus, we have interpreted Ct values of <=31.5 as present and >=32.5 as absent.

Results

	Sample Information		Bands	Other Sample Information
Lane	Age	Structure	Size Not Specified	Amount	Genetic Background	Mutant Allele(s)	Sex	Note
8-cell-E1-B1-first allele	Lane not used in this assay
8-cell-E1-B1-second allele	E2.5	TS3: 8-cell stage embryo	Present (a)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 1 from embryo 1.
8-cell-E1-B2-first allele	Lane not used in this assay
8-cell-E1-B2-second allele	E2.5	TS3: 8-cell stage embryo	Present (b)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 2 from embryo 1.
8-cell-E2-B1-first allele	Lane not used in this assay
8-cell-E2-B1-second allele	E2.5	TS3: 8-cell stage embryo	Present (c)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 1 from embryo 2.
8-cell-E2-B2-first allele	Lane not used in this assay
8-cell-E2-B2-second allele	E2.5	TS3: 8-cell stage embryo	Present (d)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 2 from embryo 2.
8-cell-E3-B1-first allele	Lane not used in this assay
8-cell-E3-B1-second allele	E2.5	TS3: 8-cell stage embryo	Present (e)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 1 from embryo 3.
8-cell-E3-B2-first allele	Lane not used in this assay
8-cell-E3-B2-second allele	E2.5	TS3: 8-cell stage embryo	Present (f)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 2 from embryo 3.
4-cell-E1-B1-first allele	Lane not used in this assay
4-cell-E1-B1-second allele	E2.0	TS3: 4-cell stage embryo	Present (g)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 1 from embryo 1.
4-cell-E1-B2-first allele	Lane not used in this assay
4-cell-E1-B2-second allele	E2.0	TS3: 4-cell stage embryo	Present (h)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 2 from embryo 1.
4-cell-E2-B1-first allele	Lane not used in this assay
4-cell-E2-B1-second allele	E2.0	TS3: 4-cell stage embryo	Present (i)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 1 from embryo 2.
4-cell-E2-B2-first allele	Lane not used in this assay
4-cell-E2-B2-second allele	E2.0	TS3: 4-cell stage embryo	Present (j)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 2 from embryo 2.
4-cell-E3-B1-first allele	Lane not used in this assay
4-cell-E3-B1-second allele	E2.0	TS3: 4-cell stage embryo	Present (k)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 1 from embryo 3.
4-cell-E3-B2-first allele	Lane not used in this assay
4-cell-E3-B2-second allele	E2.0	TS3: 4-cell stage embryo	Present (l)	Not Specified; total RNA	MF1		Not Specified	This reaction used blastomere 2 from embryo 3.

Notes:
(a) The averaged Ct value from 3 technical replicates was 24.83480133.
(b) The averaged Ct value from 3 technical replicates was 25.70453367.
(c) The averaged Ct value from 3 technical replicates was 25.44545267.
(d) The averaged Ct value from 3 technical replicates was 25.54577133.
(e) The averaged Ct value from 3 technical replicates was 19.451174.
(f) The averaged Ct value from 3 technical replicates was 18.94900567.
(g) The averaged Ct value from 3 technical replicates was 21.01278633.
(h) The averaged Ct value from 3 technical replicates was 20.69821033.
(i) The averaged Ct value from 3 technical replicates was 19.45273633.
(j) The averaged Ct value from 3 technical replicates was 19.97839233.
(k) The averaged Ct value from 3 technical replicates was 20.744212.
(l) The averaged Ct value from 3 technical replicates was 19.83422333.

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