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Gene Expression Data
Assay Details
Assay
Reference: J:168660 Mizutani R, et al., Developmental expression of sorting nexin 3 in the mouse central nervous system. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):33-40
Assay type: RNA in situ
MGI Accession ID: MGI:5007700
Gene symbol: Snx3
Gene name: sorting nexin 3
Probe: Snx3 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A,B,C: embryonic day 9.5 (more )
Note: (B) High magnification view of (A). (C) Frontal view of (A).
Structure Level Pattern Image Note
TS15: 1st branchial arch Present 1C , 1A , 1B
TS15: 2nd branchial arch Present 1C , 1A , 1B
TS15: eye Present 1C , 1A , 1B
TS15: future forebrain Present 1C , 1A , 1B
TS15: limb Present 1C , 1A , 1B
TS15: somite Present 1C , 1A , 1B
TS15: 1st branchial arch mandibular component Strong 1B , 1A
TS15: 1st branchial arch maxillary component Strong 1B , 1A

Specimen 1E: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future forebrain Strong 1E
TS15: optic vesicle Strong 1E

Specimen 1F: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future hindbrain Strong 1F
TS15: otocyst Strong 1F

Specimen 1G: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: limb Strong 1G

Specimen 1H,I,J: embryonic day 10.5 (more )
Note: (I) High magnification view of (H). (J) Frontal view of (H).
Structure Level Pattern Image Note
TS17: 2nd branchial arch Present 1H , 1I , 1J
TS17: eye Present 1H , 1I , 1J
TS17: forebrain Present 1H , 1I , 1J
TS17: somite Present 1H , 1I , 1J
TS17: limb Present 1H , 1J

Specimen 1K: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forebrain Present 1K
TS17: optic cup inner layer Present 1K

Specimen 1L: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: otocyst Present 1L

Specimen 1M: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: limb Present 1M

Specimen 1N: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: somite Present 1N

Specimen 2A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong 2A
TS23: cortical plate Strong 2A

Specimen 2B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Strong 2B
TS23: cortical plate Strong 2B

Specimen 2D: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular zone Strong 2D
TS26: cortical plate Strong 2D

Specimen 2E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular zone Strong 2E
TS26: cortical plate Strong 2E

Specimen 2F: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 2F
TS28: cortical layer III Present 2F
TS28: cortical layer IV Present 2F
TS28: cortical layer V Present 2F
TS28: cortical layer VI Present 2F

Specimen 2G: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 2G
TS28: cortical layer III Present 2G
TS28: cortical layer IV Present 2G
TS28: cortical layer V Present 2G
TS28: cortical layer VI Present 2G

Specimen 2H: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 2H
TS28: cortical layer III Present 2H
TS28: cortical layer IV Present 2H
TS28: cortical layer V Present 2H
TS28: cortical layer VI Present 2H

Specimen 2I: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 2I
TS28: cortical layer III Present 2I
TS28: cortical layer IV Present 2I
TS28: cortical layer V Present 2I
TS28: cortical layer VI Present 2I

Specimen 2J: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Strong 2J
TS28: cortical layer III Strong 2J
TS28: cortical layer IV Present 2J
TS28: cortical layer V Present 2J
TS28: cortical layer VI Present 2J

Specimen 2K: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Strong 2K
TS28: cortical layer III Strong 2K
TS28: cortical layer IV Present 2K
TS28: cortical layer V Present 2K
TS28: cortical layer VI Present 2K

Specimen 2L: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cortical layer II Strong 2L
TS28: cortical layer III Strong 2L
TS28: cortical layer IV Present 2L
TS28: cortical layer V Present 2L
TS28: cortical layer VI Present 2L

Specimen 2M: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cortical layer II Strong 2M
TS28: cortical layer III Strong 2M
TS28: cortical layer IV Present 2M
TS28: cortical layer V Present 2M
TS28: cortical layer VI Present 2M

Specimen 3A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Strong Regionally restricted 3A Expression is in the ventricular zone.

Specimen 3B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hippocampus Strong Regionally restricted 3B Expression is in the ventricular zone.

Specimen 3D: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: dentate gyrus Strong 3D
TS26: hippocampus CA1 Strong 3D
TS26: hippocampus CA2 Strong 3D
TS26: hippocampus CA3 Strong 3D

Specimen 3E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: hippocampus CA1 Strong 3E

Specimen 3F: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: hippocampus CA3 Strong 3F

Specimen 3G: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: dentate gyrus Strong 3G

Specimen 3H: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3H
TS28: hippocampus CA1 Strong 3H
TS28: hippocampus CA2 Strong 3H
TS28: hippocampus CA3 Strong 3H

Specimen 3I: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA1 Strong 3I

Specimen 3J: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA3 Strong 3J

Specimen 3K: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3K

Specimen 3L: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3L
TS28: hippocampus CA1 Strong 3L
TS28: hippocampus CA2 Strong 3L
TS28: hippocampus CA3 Strong 3L

Specimen 3M: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA1 Strong 3M

Specimen 3N: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA3 Strong 3N

Specimen 3O: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3O

Specimen 3P: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3P
TS28: hippocampus CA1 Strong 3P
TS28: hippocampus CA2 Strong 3P
TS28: hippocampus CA3 Strong 3P

Specimen 3Q: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA1 Strong 3Q

Specimen 3R: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA3 Strong 3R

Specimen 3S: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3S

Specimen 3T: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3T
TS28: hippocampus CA1 Strong 3T
TS28: hippocampus CA2 Strong 3T
TS28: hippocampus CA3 Strong 3T

Specimen 3U: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus CA1 Strong 3U

Specimen 3V: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus CA3 Strong 3V

Specimen 3W: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 3W

Specimen 4A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: piriform cortex Present 4A

Specimen 4B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: piriform cortex Present 4B

Specimen 4D: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: piriform cortex Present 4D

Specimen 4E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: piriform cortex Present 4E

Specimen 4F: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present 4F

Specimen 4G: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present 4G

Specimen 4H: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present 4H

Specimen 4I: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present 4I

Specimen 4J: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present 4J

Specimen 4K: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present Regionally restricted 4K Expression is mostly detected in layer II.

Specimen 4L: postnatal adult (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present Regionally restricted 4L

Specimen 4M: postnatal adult (more )
Structure Level Pattern Image Note
TS28: piriform cortex Present Regionally restricted 4M Expression is mostly detected in layer II.

Specimen 5A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: piriform cortex Present 5A Expression is strong in the external granular layer.

Specimen 5B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present 5B Expression is strong in the external granular layer.

Specimen 5D: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebellum Present 5D Expression is strong in the external granular layer.

Specimen 5E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebellum Present 5E Expression is strong in the external granular layer.

Specimen 5F: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 5F
TS28: cerebellum external granule cell layer Strong 5F

Specimen 5G: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 5G
TS28: cerebellum external granule cell layer Strong 5G

Specimen 5H: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 5H
TS28: cerebellum external granule cell layer Strong 5H

Specimen 5I: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 5I
TS28: cerebellum external granule cell layer Strong 5I

Specimen 5J: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 5J
TS28: cerebellum external granule cell layer Strong 5J
TS28: cerebellum internal granule cell layer Weak 5J

Specimen 5K: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 5K
TS28: cerebellum external granule cell layer Strong 5K
TS28: cerebellum internal granule cell layer Weak 5K

Specimen 5L: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 5L
TS28: cerebellum external granule cell layer Strong 5L
TS28: cerebellum internal granule cell layer Weak 5L

Specimen 5M: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 5M
TS28: cerebellum external granule cell layer Strong 5M
TS28: cerebellum internal granule cell layer Weak 5M

Specimen 6A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord mantle layer Present Regionally restricted 6A Expression is in the grey matter.
TS23: spinal cord ventricular layer Present Regionally restricted 6A Expression is in the ependymal layer around the central canal.

Specimen 6B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord mantle layer Present Regionally restricted 6B Expression is in the grey matter.

Specimen 6D: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: spinal cord mantle layer Present Regionally restricted 6D Expression is in the grey matter.
TS26: spinal cord ventricular layer Present Regionally restricted 6D Expression is in the ependymal layer around the central canal.

Specimen 6E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: spinal cord mantle layer Present Regionally restricted 6E Expression is in the grey matter.
TS26: spinal cord ventricular layer Present Regionally restricted 6E Expression is in the ependymal layer around the central canal.

Specimen 6F: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: spinal cord ventral horn Strong 6F

Specimen 6G: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: spinal cord ventral horn Strong 6G

Specimen 6H: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: spinal cord ventral horn Strong 6H

Specimen 6I: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: spinal cord ventral horn Strong 6I

Specimen 6J: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: spinal cord Weak 6J

Specimen 6K: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: spinal cord Weak 6K

Specimen 6L: postnatal adult (more )
Structure Level Pattern Image Note
TS28: spinal cord Weak 6L

Specimen 6M: postnatal adult (more )
Structure Level Pattern Image Note
TS28: spinal cord Weak 6M


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory