About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4944650
Gene symbol: Sema3c
Gene name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Probe: g00063
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g00063 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Widespread g00063_sj_g4_082_e11 , g00063_sj_g4_032_e11
TS19: midbrain Present Widespread g00063_sj_g4_032_e11 , g00063_sj_g4_082_e11
TS19: hindbrain Present Widespread g00063_sj_g4_032_e11 , g00063_sj_g4_082_e11
TS19: future spinal cord Present Widespread g00063_sj_g4_082_e11 , g00063_sj_g4_032_e11
Specimen g00063 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Regionally restricted g00063_sj_g4_082_e15 , g00063_sj_g4_132_e15 , g00063_sj_g4_032_e15 Expression was region specific and scattered.
TS23: ganglionic eminence Present Regionally restricted g00063_sj_g4_032_e15 , g00063_sj_g4_082_e15 , g00063_sj_g4_132_e15 Expression was region specific and scattered.
TS23: hindbrain Present Regionally restricted g00063_sj_g4_082_e15 , g00063_sj_g4_132_e15 , g00063_sj_g4_032_e15 Expression was region specific and scattered.
TS23: hypothalamus Present Widespread g00063_sj_g4_132_e15 , g00063_sj_g4_032_e15 , g00063_sj_g4_082_e15
TS23: midbrain Present Widespread g00063_sj_g4_032_e15 , g00063_sj_g4_132_e15 , g00063_sj_g4_082_e15
TS23: main olfactory bulb Present Widespread g00063_sj_g4_032_e15 , g00063_sj_g4_132_e15 , g00063_sj_g4_082_e15
TS23: retina Present Regionally restricted g00063_sj_g4_132_e15 , g00063_sj_g4_032_e15 , g00063_sj_g4_082_e15
TS23: hippocampus Strong Regionally restricted g00063_sj_g4_032_e15 , g00063_sj_g4_132_e15 , g00063_sj_g4_082_e15 Expression was region specific and scattered.
TS23: neocortex Strong Regionally restricted g00063_sj_g4_132_e15 , g00063_sj_g4_082_e15 , g00063_sj_g4_032_e15 Expression was region specific and scattered.
TS23: spinal cord Strong Regionally restricted g00063_sj_g4_132_e15 , g00063_sj_g4_082_e15 , g00063_sj_g4_032_e15 Expression was region specific and scattered.
Specimen g00063 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00063_sj_g4_082_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_132_p7
TS28: basal ganglia Present Regionally restricted g00063_sj_g4_132_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_082_p7 Expression was region specific and scattered.
TS28: cerebellum Present Widespread g00063_sj_g4_132_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_082_p7
TS28: cerebral cortex Present Widespread g00063_sj_g4_082_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_132_p7
TS28: choroid plexus Present Regionally restricted g00063_sj_g4_082_p7 , g00063_sj_g4_132_p7 , g00063_sj_g4_032_p7
TS28: hypothalamus Present Widespread g00063_sj_g4_132_p7 , g00063_sj_g4_082_p7 , g00063_sj_g4_032_p7
TS28: meninges Present Regionally restricted g00063_sj_g4_082_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_132_p7
TS28: midbrain Present Widespread g00063_sj_g4_082_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_132_p7
TS28: main olfactory bulb Present Regionally restricted g00063_sj_g4_082_p7 , g00063_sj_g4_132_p7 , g00063_sj_g4_032_p7 Expression was region specific and scattered.
TS28: retina Present Widespread g00063_sj_g4_032_p7 , g00063_sj_g4_132_p7 , g00063_sj_g4_082_p7
TS28: spinal cord Present Regionally restricted g00063_sj_g4_132_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_082_p7
TS28: thalamus Present Regionally restricted g00063_sj_g4_132_p7 , g00063_sj_g4_082_p7 , g00063_sj_g4_032_p7 Expression was region specific and scattered.
TS28: brainstem Strong Regionally restricted g00063_sj_g4_032_p7 , g00063_sj_g4_082_p7 , g00063_sj_g4_132_p7 Expression was region specific and scattered.
TS28: hippocampus Strong Regionally restricted g00063_sj_g4_082_p7 , g00063_sj_g4_032_p7 , g00063_sj_g4_132_p7 Expression was region specific and scattered.
Specimen g00063 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00063_sj_g45_075_adc , g00063_sj_g45_025_adc , g00063_sj_g45_125_ads , g00063_sj_g45_075_ads , g00063_sj_g45_025_ads
TS28: basal ganglia Present Regionally restricted g00063_sj_g45_075_ads , g00063_sj_g45_075_adc , g00063_sj_g45_125_ads , g00063_sj_g45_025_ads , g00063_sj_g45_025_adc Expression was region specific and scattered.
TS28: brainstem Present Regionally restricted g00063_sj_g45_125_ads , g00063_sj_g45_025_ads , g00063_sj_g45_025_adc , g00063_sj_g45_075_adc , g00063_sj_g45_075_ads Expression was region specific and scattered.
TS28: cerebellum Present Regionally restricted g00063_sj_g45_125_ads , g00063_sj_g45_075_adc , g00063_sj_g45_075_ads , g00063_sj_g45_025_adc , g00063_sj_g45_025_ads Expression was region specific and scattered.
TS28: cerebral cortex Present Widespread g00063_sj_g45_125_ads , g00063_sj_g45_025_adc , g00063_sj_g45_075_ads , g00063_sj_g45_075_adc , g00063_sj_g45_025_ads
TS28: choroid plexus Present Regionally restricted g00063_sj_g45_075_ads , g00063_sj_g45_025_adc , g00063_sj_g45_125_ads , g00063_sj_g45_075_adc , g00063_sj_g45_025_ads
TS28: hypothalamus Present Regionally restricted g00063_sj_g45_125_ads , g00063_sj_g45_025_adc , g00063_sj_g45_075_ads , g00063_sj_g45_075_adc , g00063_sj_g45_025_ads Expression was region specific and scattered.
TS28: meninges Present Regionally restricted g00063_sj_g45_125_ads , g00063_sj_g45_075_ads , g00063_sj_g45_025_ads , g00063_sj_g45_075_adc , g00063_sj_g45_025_adc
TS28: midbrain Present Widespread g00063_sj_g45_125_ads , g00063_sj_g45_025_ads , g00063_sj_g45_075_ads , g00063_sj_g45_075_adc , g00063_sj_g45_025_adc
TS28: retina Present Regionally restricted g00063_sj_g45_075_ads , g00063_sj_g45_075_adc , g00063_sj_g45_025_ads , g00063_sj_g45_025_adc , g00063_sj_g45_125_ads
TS28: spinal cord Present Regionally restricted g00063_sj_g45_125_ads , g00063_sj_g45_075_ads , g00063_sj_g45_075_adc , g00063_sj_g45_025_adc , g00063_sj_g45_025_ads Expression was region specific and scattered.
TS28: thalamus Present Widespread g00063_sj_g45_075_ads , g00063_sj_g45_075_adc , g00063_sj_g45_125_ads , g00063_sj_g45_025_adc , g00063_sj_g45_025_ads
TS28: hippocampus Strong Regionally restricted g00063_sj_g45_025_adc , g00063_sj_g45_075_adc , g00063_sj_g45_075_ads , g00063_sj_g45_025_ads , g00063_sj_g45_125_ads Expression was region specific and scattered.
TS28: main olfactory bulb Strong Regionally restricted g00063_sj_g45_075_adc , g00063_sj_g45_025_adc , g00063_sj_g45_125_ads , g00063_sj_g45_025_ads , g00063_sj_g45_075_ads Expression was region specific and scattered.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory